DreINT0100825 @ danRer10
Intron Retention
Gene
ENSDARG00000061635 | myo5aa
Description
myosin VAa [Source:ZFIN;Acc:ZDB-GENE-041027-2]
Coordinates
chr18:39008649-39010577:+
Coord C1 exon
chr18:39008649-39008746
Coord A exon
chr18:39008747-39010490
Coord C2 exon
chr18:39010491-39010577
Length
1744 bp
Sequences
Splice sites
5' ss Seq
CACGTATGT
5' ss Score
7.26
3' ss Seq
AAATATTTTGCTATTACCAGGTT
3' ss Score
5.62
Exon sequences
Seq C1 exon
TTCCGGAACTCTCTGCAGCTGCTGATGGAGACACTGAATGCCACTACACCTCATTATGTTCGATGCATTAAACCCAACGATTACAAACATGCCTTCAC
Seq A exon
GTATGTTATTTGGCTATGTTTTCCCACTATAGATATCTGTTTTCATATTTTTAAGCATACTCCTGCTTATATATTTGGATTCAGAATAGTCAGCTTTCTAGTATGGTACAGAATAGAGTATACAGAACATAGAAATTAAGAACTATTTTAAATAAATTAAGAATATGTAAGAAATGAATTAAATTAAGAATAATTTAGAAATTAAGTAGGTTTGTGGCTACAAAAAAGGAGGTTGTTTATTTTAAAAGTGTTTTTGTTAAGATATTTATCTAACAGTGACCACAGCTGACACATATGTTTATTTCATGTAAGTGGGATTTTATGTAAACGAACAACTTGAAGTAGAAAGCATCATTGAAGTTGAGCTCGCAGAAATTGCATAATTTTCTATGCATGAGTGTTAGCAGATTTGACTGAATTGATAATTTTTTTTTTTGCAACAAAACGTTTTTATTTGTGATCAGATTCATTCAATTTAAGATCTTTAAACAGTCCGTCCAGGATTTTGCAGGGATATAATATATTGCACATATGTAATATAAACAAATGAATATTTTCTATATAATTCTATACAATAATACATTTGTGCATATATTGTACATTAGATCTCAAATCTGGAGCTAATCTTAAAGAATGATTAGCGATTACGATCCAAAAATTATTAGTTTTAGGAAAATGTATTAATCAAGGATTTTATTAAAGAGCAAGAATCAAGAGAAACATCTAACATCAATATATATATATACACATACATACAGTATGTACTGTATATATATATATATATATATATATATATATATATATATATATATGTATAAATTCTGTTGAAATTTTGTAGTTTGTGATTTTTTTATAATATTTTGCATTGTTTAAATGTATTATCTCTCCATTTCTAAAGATGTACAGTGACTAAAATATTATTTTGATAAATATATCCCTTAAATTAATCTGTTTTGTTCAAATGCACGAAATATTACCTATAGTCACTGAGAAATAAATATAAATATTCATTTTTAAAATATCAATGTTTTTCTCAAAATATATGGCATTATTTGCTTCAATTATTTTATTTACACCAGCATTGTTTATTTATTTATTTATTTTTGTTCTCAAGAACCACAAAATTCTGGAAGGACTGTTCAAAGCACACAAGAAACATGATAATCTTGAATGTTTCCAAGTTTATAGAAACTAGTTAGTCTAGTTCTTTGCTGTTCGATTCACCTTATTCTTTGAAAACGGGCTTGTGCAGTCATTAGATTTTTTTTTTAGCTTGAGACTTCCTGTCTCATTCACTACTATTCATTTTTAGACGTTAAAAACTGCTTGTTATTCTGCTTGTTGTTGCAAACTGATGTTTTCCTATTATTCTGCTTTGTTTGTAGTGTCATGAATACACTTGTTTGTAGAGCAAGCAGTTTCACAGTTCTTGACGTTTATCATTCCTAGTCATTTCTCCCATTGGCAACTGAATCAGAAGTTCTAAAACAATCACAAAAAACTTCCCGCATGTCCACATCAAAGAATAAGTTCAATAAAACATTTGAAATCTTTGGCATCTTATATAAAAACCTCGTAAAGTATTAGCTGGTAGAATATATATATATATATTTTTTTTCAATCATGCACCAAAATGTTATCTAGTTTAGCCAAGACTAATTTTGAATGCGGTATATTTTTCACAACTATTGGTGACTACAGGATCACAGTGTTGCTAGACTTGTAAATATTTTGCTATTACCAG
Seq C2 exon
GTTTGACCCCAAGAGGGCAGTGCAGCAACTGCGTGCTTGTGGAGTTTTGGAAACAATCCGCATCTCTGCAGCTGGTTTCCCATCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061635:ENSDART00000133618:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]