BtaINT0098157 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006489 | MYO5A
Description
myosin VA (heavy chain 12, myoxin) [Source:HGNC Symbol;Acc:HGNC:7602]
Coordinates
chr10:58088927-58090833:+
Coord C1 exon
chr10:58088927-58089144
Coord A exon
chr10:58089145-58090676
Coord C2 exon
chr10:58090677-58090833
Length
1532 bp
Sequences
Splice sites
5' ss Seq
ATGGTATGT
5' ss Score
8.35
3' ss Seq
CGCCACTCTTTCTCTCCCAGCTA
3' ss Score
7.9
Exon sequences
Seq C1 exon
ATACAGGACAAGGACAAATACCAGTTTGGGAAGACAAAGATCTTTTTCCGGGCTGGTCAAGTGGCCTACCTAGAAAAATTGAGGGCAGACAAGCTGAGGGCTGCCTGCATCCGGATCCAGAAGACGATCCGAGGGTGGCTGCTGCGGAAGAAGTACCTGCGCATGCGCAAGGCTGCCATCACTGTGCAGAGATATGTGCGAGGCCACCAGGCCCGATG
Seq A exon
GTATGTGTCCTGGTGGCGTGTACACGCTTGCTCAGGGGCAGCCAAGATTGGAGAGTGCATCTGACTTATTGTCTAAGCTAGGACAGTTTGGGGTGGGGTGGTCACCCTACCACTCAAGGCAGTTCAGTTCAGTCGCTGAGTCGTGTCCAACTCTTCAAGACCCCAGGAACCGCAGCACACCAGGCCTCCCTGTCCATCACCAACTCCCAGAGTTTACCCATACTCATGTCCATTGAATCGGTGATGCCATCCAACCATCTCATCCTCTATCATCCCCTTCTCCTCCTGCCTTCAATCTTTCCCAGCATCAGGGTCTTTTCAAATGAGTCAGCTCTTCGCATCAGGTGGCCAAAGTATTGGAGTTTCAACTTCAACATCAGTCCTTCCAATGGACACTCAGGACTGATCTCCTTTAGGATAGACTGGTTTAATCTCCTTGCAGTCCAAGGGACTCTCAAGAGGCTTCTCCAACACCACAGTTCAAAAGCATCAATTCTTTGGTGCTCAGCTTTCTTTATAGTCCAACTCTCACATCCACTCAAGGCAACACCTTACCTTTTCTTAGTTCCAAGGAATTAACTCATAAGACAGTTAAATAGAATATAATTTCACTCACCTTTAGGAATCAGATTGAACCTCAAAAAAAATTACAAATTACTGTCTACTCATGTCCTCAGTATTTATTTTTTATACGTTTATGTTGGGCTTCCCTGGTGGCTCAGCTGGTAAAGAATCTGCCTGCAGTGTGGGAGACCTGGGTTCAATCCCTGGGTTGGGAAATCCCCTGGAGAAGGGAAGGGCTACCCACTCCAATATTCTGGCCTGGAGAATTCCATGGACTGTGTAGTCCATTGGGTTGCAAAGAGTCAGACACTAAGCGACTTTCACTTTCACTTTTAATGGACTTGAAGAAATCATCTGTAAATCAGGACAATCATGAATATAACCTGTTAAAAATGCTTCCATTGAGGTGTTTTTAGGAGCAATAAGCTGAGAACTGTAGAAAAGAATTAACTGACATGTGATTACATATTAGGATAATTTTAATTTAGAGCTATCAGAAGACATGAATTAATGATAAAAAAAAACTTATGCCCAAGTAAATAGATTGAGAAAAAACATCATGTGTTCACAATAGATAGAGCTCAGGAAGCTGGTGATAAGTAGGTATGGTATTACTGTGTAAACTGGTCTGCTATGTAAAGGGTACATAGCCTGGGGTAATAAGCACAGTCCTAAAAGGAATAAACCTTTATGACCTTTAACTTCTTTATTGTAAAATCGAGTGATATGGGACAGCCTACATTTTAGGGTTAGGTAAGGTTCATTTGAGATAACAGATGGACAGGTATTCGGGGCTCATAAACTAACTACAAATATAAGAAATATAAATGTTGATTTAACATGTATGTTATTAGAATAATCAATGGAAGTACTACTTATTATGGCAAGACATTGGTGCTTTCATCCTCTACAAAATGTGTTCCTGGGTTTTTCTGACTACTGACAACTCGCCACTCTTTCTCTCCCAG
Seq C2 exon
CTATGCTAAGTTCCTGCGCAGAACCAAGGCAGCCACTATCATTCAGAAGTACTGGCGCATGTATGTAGCTCGCCGGAGATACAAGATCATGCGAACTGCCACAATTGTCCTTCAGTCTTATTTGCGAGGCTACTTGGCCAGAAATAGGTATCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006489:ENSBTAT00000008516:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(2.3=21.9),PF0061222=IQ=WD(100=28.8),PF0061222=IQ=PU(81.0=23.3)
A:
NA
C2:
PF0061222=IQ=PD(14.3=5.7),PF0061222=IQ=WD(100=39.6),PF0061222=IQ=WD(100=39.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGACAAGGACAAATACCAGT
R:
GCCAAGTAGCCTCGCAAATAA
Band lengths:
354-1886
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development