GgaINT1018703 @ galGal4
Intron Retention
Gene
ENSGALG00000004624 | MYO5A
Description
unconventional myosin-Va [Source:RefSeq peptide;Acc:NP_990631]
Coordinates
chr10:8301490-8302792:+
Coord C1 exon
chr10:8301490-8301701
Coord A exon
chr10:8301702-8302635
Coord C2 exon
chr10:8302636-8302792
Length
934 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
3' ss Seq
TTGTCATCTTTCTTGCATAGCTA
3' ss Score
7.64
Exon sequences
Seq C1 exon
GACAAGGATAAGTACCAGTTTGGTAAAACAAAAATATTTTTCCGGGCTGGTCAAGTAGCCTATCTTGAAAAAATAAGGGCAAATAAGTTGAGAGCTGCCTGTATCCGCATCCAAAAAACAATCCGAGGCTGGCTGATGAGAAAAAAGTACATGCGTATGAGGAGGGCTGCCATCACCATTCAGAGATATGTCAAAGGGCACCAAGCACGATG
Seq A exon
GTAAGCAATACTCCGGGGAGAATCCATGCTAGCCTCAATTCAGATACCTTTAAGTAGGACATTTAAATGTGATATATTTGCTCTCTCCTGTCTATGCTGGCTGAGAGGAAATGATTTTACAGGGAAATTAAGGAAATTCAATATAATGAGAGTGTCTCTTCTGCCTGTTTTTGACCTTCATAAGAGGACAGTAGCACCCTGGCCAGATGATGCTTAGAACAGTATGTTGTTAGTGGGAGCAGAATAAAACTAATACTAGGAGATATGTCTGCAAGTGAGGTAAAGCAGGACTTCTGGTTCAGTTGTCATTGCTCAGTTTCCATGTCTGCTCCTGACTGGGTCTGTGCAGCTAGAGAAGTGATTTGTCACCCAGAGTGCAGCTGTGAAGGGAGTTAGGTCAGTCAGAGTCATTTGTTTGGATTTACTCCTGAGGGATGGCCCTGCATGAGCCAAAGAGTAGGAGTGAGGGTGGCCTCATTAAAGACGAGATGGTTTTGAAGACTGTAAGTATCTACCTTTGAAGAGAGGCTTATGTCATGATGCTTTGCAGTTGTCTTCCAGAGAGGACCAGGAATGAGCAAACATTTTCTACAGGGTGAGTTTAGGAGAGGAAGTCTGGAAGCAGAAATAGGTTTAAAGCTGGAGAAAAGGCGATGAGAAATGAAGCTGAATTTATTTTGCCAGCTCTATAGCACAGTTTCTAGAAGAAGTGAAAACAACTCCTGCAAAACCTTGCAAGGTTTCTGTTGGCCATTCTGTTGTACTGCCGTACGGTAAAATAGCAAGTCAGTGTGTGGTACTGCTGACAACACTAGGAAGAAACTGAAGGAAAGTATGTAGTTCTTAAGAAAGTGAGTAAAGTTACAGGATGTAAAAAATAGTATTCAAATATTGGAAAAGAATTACAGCTATTATTGTCATCTTTCTTGCATAG
Seq C2 exon
CTATGCCACATTCCTGCGGAGAACACGGGCTGCCATCATTATTCAGAAGTTCCAGCGTATGTATGTGGTCCGCAAAAGATACCAGTGCATGCGAGATGCTACTATTGCTCTTCAAGCTCTCTTAAGAGGTTACCTGGTCAGGAACAAGTACCAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004624:ENSGALT00000039066:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(2.0=19.7),PF0061222=IQ=WD(100=29.6),PF0061222=IQ=PU(85.0=23.9)
A:
NA
C2:
PF0061222=IQ=PD(10.0=3.8),PF0061222=IQ=WD(100=39.6),PF0061222=IQ=WD(100=39.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAAAATATTTTTCCGGGCTGGT
R:
CATTTGGTACTTGTTCCTGACCA
Band lengths:
342-1276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]