RnoINT0097225 @ rn6
Intron Retention
Gene
ENSRNOG00000058866 | Myo5a
Description
myosin VA [Source:RGD Symbol;Acc:3143]
Coordinates
chr8:82091850-82092985:+
Coord C1 exon
chr8:82091850-82092061
Coord A exon
chr8:82092062-82092828
Coord C2 exon
chr8:82092829-82092985
Length
767 bp
Sequences
Splice sites
5' ss Seq
ATGGTGGGT
5' ss Score
6.18
3' ss Seq
CCACTCTTGTCTTTGGGCAGCTA
3' ss Score
7.37
Exon sequences
Seq C1 exon
GACAAGGATAAATACCAGTTTGGTAAGACAAAGATCTTTTTTCGTGCTGGTCAAGTGGCCTATCTAGAAAAATTGAGGGCTGACAAACTGAGGGCGGCCTGCATCCGGATCCAGAAGACGATTCGTGGGTGGCTGCTGAGGAAGAGATACCTGTGTATGCAGAGGGCAGCCATCACAGTGCAGCGATACGTGCGTGGCTATCAGGCTCGATG
Seq A exon
GTGGGTCTCCTTATGGCCTCATGGGCCTCCTCTAGCGCATGGTCCACTCTTGGACAGGTCCCAGTGAGAAGATAGTGTCACAGTCACTGTTAGTTTCAAAGCTTAGCAAATTAGCTCACAAGACAATTTAAAAGAGTAAATTCTTACGTAGATTTATGATAGTAAAGATTTGAATTGCTACCGACTTAGGTCCTTAGAATTTGTACACCTTCTACTTTAACATGGAGCTTGAAGAAATTGTATGTAAATTAAAAGAACCACGAATATGAGACAGATAATCTTGTCTCTACTGAGAGCAATTAACTAAGAAAATTCTAGCAAAAAATCATATTTCAGTATGAAATAATGAAATACATAGAGGTACAAGTGAAAGTGAATTAATGGTGAAGCACGTATACTCAGATTCAGGAAAAGATGTTACTTGAAAAGTGATCTACAATAACAGTAAGGTAAGTTTGGAATTACAGTGTGCATCAGTTTGCTGTGTGAAGGGAACTACGATCCTGTCCTAGAAAGAGGAAAGTGTTATGAACTTCTTTTCTTTTCTGTAAAATGTGGCAATATGGGACATCCTGCTTTTCAAAATTAGGGAAACCCCAATGAGAAAGTAGTTCAGAAGCTACACATTGCTGAACACACGTGAGCATAAGTGCTTATCTTGGTGAATATTAGAATACAGTGAGGTTCTTCTCGGGATACCTAAGACACTGACATTGACGGTTCGCAGTCCTGGTGAGTGACAGTGCACCACTCTTGTCTTTGGGCAG
Seq C2 exon
CTATGCTAAGTTTCTGCGCAGAACCAAGGCAGCAACCACCATTCAGAAGTACTGGCGCATGTATGTGGTCCGCAGGAAGTACAAGATTAGACGAGCTGCCACCATTGTTCTTCAGTCTTATTTGAGAGGCTACTTGGCAAGAAATAGGTATCGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058866:ENSRNOT00000079535:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(2.1=19.7),PF0061222=IQ=WD(100=29.6),PF0061222=IQ=PU(81.0=23.9)
A:
NA
C2:
PF0061222=IQ=PD(14.3=5.7),PF0061222=IQ=WD(100=39.6),PF0061222=IQ=WD(100=39.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTTTGGTAAGACAAAGATCTT
R:
TTTCTTGCCAAGTAGCCTCTCA
Band lengths:
342-1109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]