DreINT0100828 @ danRer10
Intron Retention
Gene
ENSDARG00000061635 | myo5aa
Description
myosin VAa [Source:ZFIN;Acc:ZDB-GENE-041027-2]
Coordinates
chr18:39010916-39013798:+
Coord C1 exon
chr18:39010916-39011127
Coord A exon
chr18:39011128-39013641
Coord C2 exon
chr18:39013642-39013798
Length
2514 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
3' ss Seq
TGTTCTTCCTTTCTTCACAGTCT
3' ss Score
10.77
Exon sequences
Seq C1 exon
GATCCAGATAAGTACCAGTTTGGAAAGACCAAGATTTTTTTCCGCGCAGGTCAGGTTGCATACCTGGAGAAACTGCGTGCTGATAAGCTGCGCGCTGCCTGTATCCGCATCCAGAAGACCATCCGCTGCTGGCTGGCACGCAAGAAGTACCTGCGTATGAAGCATGCTGCCACGACTATCCAGAGATTCGTCCGTGGATACCAGGCCCGCTG
Seq A exon
GTGAGGGAAGGGGACTAGTGCATAGTGGGCGTAGCCAGACTACATTTATGAAAAGCAGAACCATTTAAAAATATAGCTGCAAGCAGTAATTATCGGGGACAAGCAGCCAAGTGGCCACATCATAAACAAGCACAGCAACAAGCTACAGAGCACCTGGAAAAATATATATCTTTTTAGCAGCATGTTCTGAGCCAAATTTGTTGGAAATTGGGCTAATGATCTATGGAGAGTTCAAAACAACAGATATTCAAACTAATTCAAGATGGTGGACAGGAAGTTGTGTCAGTTAGGGAATTAATTATACCAATGTTCTTTGTATAATCCAAAGAATCTAGCAAGACAAGTCTTGCGACAATAAACAAAACACTATTCAAAAGTCAGTTGATAAAATTTGTATGATGTCCACTGATAGAATTTAATTGTTTGTCAATTATACCCCGAAGGCGGCTCAAACTGATGTAGTTTGGTCAATGTCAGGTCTAGATCACACACTTTAAGTTTGGTTTCATTACTTCAAACCATTGCAGTGAATCAGCCTGTGATGTCATCTGGCAAAATTACATCAAGTTTTTGCATATGCTAAATGACAGCAGTTTTATCTATCCACATGAATTCAATGCCTTTTACTCTACATGGTCTGAAGATGATCCAAGTCAAATTTGGTCAAAATTGGACCAATGGTCTTGGAGGAGTTAAAAAAGAATGTTTTGAACTAAATCAACATGGCGGACAGGAAGTTTGGCAGATAATGGCATACAGTGCATTCGGAAAAATTTCATAGTACTTCAATTTCCATATTTTTTATGTAACTGCCTTATTCCAAAATGGATTCAATTCATTTATTTCCTCCACATTTTACACACAATACACAATGTGAAAAAAGATTTTTTTGAAATTATCGCAATTTTTAAAAAAAATTTAAAAACCTGAAACATCACATGTACATAAGTATTCACAGCCTTTGACATGAAGCTCTAAACTAAGCTCAGGTACATTCTGTTTCCACTGATCATTCTTGAGATGTTTTAGCAGCTTATTTGGAGTTCACCTGTGGTAAATTCAGTTGATTGGACATGATTTGAAAAGGCATACACCTGTCTATATAAGCTCCCAGGCTTGACAGTGCATGCCAAAGCACAAACCAAGCATGAAAACAAAGGAATTGTCTGTAGACCTCCGAGACAGGATTGTCTCAAGGCACAATGCTGGGAAAGGTTACAAAAATTTTTTCTGCTGCTGCTCTGAATGTTCCAATGAGCGCAGTGGCCTCCATCATCCATAAGTGAAAGATGTTTGGAACCACCAGAACTCTTCCTATAGCTGGCCGGCCATCTAAGCTGAGTGATCAGGTACGAAGGGCCTTAGTCAGGGAGATGACCCGTAATCCGATGGTCACTCTGTCTGAGCTACAGCATTCTTACATGGAGATAAGAGAACCTTACCGAAGGACAATCATCTGTGCAGCAATCCACCAATCAGGCCTGTATGGTAGAGTGGCCAGACGGACGCCACGCCCCACCTGGAAATTGCCAAAAGGCATCTGAAGGACTCTCAGACCACAAGAAACAAAATTCTCTGGTCAGATGAGACTAAAATTTAACTCTCTAGAGTGAATGCCAGGCGTTACGTTTCGAGAAAACCAGGCACCACTCATCACCAGGCTAATACCATCCCTACAGTGAAGCATGGTGGTGGCAGCATCATGCTGTGGGGATGTTTTTCAGCAGCAGGAACTGGAAGACTAGTCAGGATAGAGGGAAAGATGAATGCAGCAATGAGACATCCTGAATGAAAATCTGCTTCATAGTTCTCCAGAGTTGGCTTCAAAACAACTTGGTGAATGTCCTTGAGTGGCCCAGCCAGAGCCCATACCTAAATCCTATTGAACATCTCTGGAGAGATCGGAAAATGGCTGTACACCGTCGCTTGCCATCCAACCTGATAGAGATGGAAAGGTACTGCAAAGAGGAATGGGCAAAAATTCACAAAGACAGGTGTGCCAAGCTTGTGGCATTATATTCAAAAAGACTTGAGACTGTAATCGCTGCCAAAGGTGCATAAACAAATATTGAGCAAAGGCTGTGAATACTTATGTACTTGTGAATTTTCAGGATTTAAAAAAAAAAAAATTGCAACAATTTAAAAAACTATTTTTTCACATTGTCATTATGGGGTATTGTGTGTAGAGTTTTGAAGAAATAAATGAATTTAATCCATTTTTGGAATAAGGCTGTAACATAAGAAACTTTGGAAAGAGTGAAGCGCTATAAATACCTTTCGGATGCACTGTAATTGGTATCTGTGTTGTCGGCATGACCCAAGGAATAATTTGAGACCAATTTCCTCATAATGCAGTCAAAAGTCATTACCAAATTTGTAAGCTTTAATAATAATGGCTAATGAATGTCTTATAACACCTGTAATGTCTTATAACACCTATAATAATATAATATAAGATTGAGGTAAAGAAATGAGTATACATTTACGTCTGTGTTGTTCTTCCTTTCTTCACAG
Seq C2 exon
TCTTGCCAAATTCCTGCGTCGCACACGTGCTGCGATCATTATTCAGAAGTACCAGCGCATGTACATCCAGAAAACGTGTTACAAACGCAAGCAGGCTGCCGCGCTGGCCATGCAGTGCATCCTCAGAGCGTATATGGCCAGACAGCTTTACAAAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061635:ENSDART00000133618:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(2.1=19.7),PF0061222=IQ=WD(100=29.6),PF0061222=IQ=PU(81.0=23.9)
A:
NA
C2:
PF0061222=IQ=PD(14.3=5.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]