BtaINT0098206 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003763 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr10:58238330-58242831:+
Coord C1 exon
chr10:58238330-58238510
Coord A exon
chr10:58238511-58242737
Coord C2 exon
chr10:58242738-58242831
Length
4227 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
CTGTCATTGCTGGGATTCAGACG
3' ss Score
3.6
Exon sequences
Seq C1 exon
ACTTCTTGAAAAAAGTTTTGAACTGAAAACACAAGACTATGAGAAGCAGATCCGGTCCTTGAAAGAAGAAATTAAAGCTCTCAAGGATGAGAAGATGCAACTACAGCATCAGCTAGAAGAAGAGCGGGTCACCTCTGATGACCTGAAAGGAGAAGTGGCCTGGCTGAGCAAGCAGGCAAAG
Seq A exon
GTAAGACTCCTCGATCATCCACGAGCTCTTGGCTGATTTGTCTGCACAAGAGAGAGCGGCTTCACGTCCCCTCGGCTCTGCTGCTAAGTCGCGTCAGTCGTGTCCGACTCTGTGCAACCCCACCGACGGCAGCCCACAGGATCAGCTAAAAGCATCCAAGCTTGTTTCTCCCTCCATTCTTCAATGCAAACCATTTTAGTGAGATTGGAAAATTTTTAAGCTTCCACTAGATACATGAAACACATGTTAGTAGAATAGTTGTTACAATTACACAAATATCCTCTGTAATCATCATGGAATAGCCATGCATAGTTTAGAAGATATGTCGTGGACTCATACCTGAATTTCTTAGCAGAACTGCCCATGTTCAGACTCTGGGTTCTGATTTCCTACTGTTGAAAATAGTAGATTGGACTGTGGAATCCAGAAGGACCACATATACCTGTGAGCCCTTCATCCTTAGCAGCCACGTAAGACTGATGTCAATCTGGGAGTCACATCATCTGGCTGCAGTTTGTATTTCATGAGATTATGTGGCTGCCCTTGGGGTGAAGTGAGTGAGAGGAAACCACTCACTTCCTCTCTGGTAGCTAAAACTATGATCTAAACTCTTCAGTGTGGTATATTAAGGAGATTAGTCTGATTTTCAAAGAAAATAAACCCATTATCATCATTTATACATGTTATAATAAGCCTATAGGTAAATACCTATACCTAAATAAGGGCTTCCCTGGTGGCTCAGTGGTAAAGAATCTGCCTGCCAGTGCAAGAGATGCAGGTTCAATCACTGGGTCTGGAAGATCCCTTTGAGAAGCAAGCCACTCTAGTATTCTTGCCTGGAAAATCCCGTGGACAGAGGAGCCTGATAGGCTACAGTCTATGGGTTGCAAAGAGTTGGACACGACCGAGCAACTAAATAGCAATAGGTAAATACAGATAAGACTTGGAACATTTACTTTAACAATACAGAGAGTGGAGCTTGAGGATGGATAGTCCTAGGTCCTGATAGCTCGCCCTGTGACCCTAAACAATGCATGTTACACTTTTGCATCTTCAGTTTTCTAGTCATTCTACTCACTTCATAGGCATGTTACAGGGGTGAAGTCATATATGTAAAATGATCAAAACATGCCAGCTTGATCTCCTATTTTACCCACTGTGGAAACAAAAGCTGTATAACCTTTAAACACTTAGGCTAACTTAGAAAATATCCAGAGATGTGAGGGGAGTTCGGGGGAGCATGGATACAAGTGTGCGTATGGCTGAGTCCCTTTGCTGTTCACCTGAAACTATCACAACATTGTTAATTGGCTATCAGATCAGATCAGTCACTCAGTCGTGTCCGACTCTCTGCAACCTCATGAATCGCAGCACGCCAGGCCTCCCTGTCCATCACCAACTCCCGGAGTTCACTCAGACTCACGTCCATCGAGTCAGTGATGCCATCCAGCCATCTCATCCTCTGTCGTCCCCTTCTCCTCCTGCCCCCAATCCCTCCCAGCATCAGAGTCTTTTCCAATGAGTCAACTCTTTGCATGAGGTGCCCAAAGTACTGGAGTTTCAGCTTTAGCATCATTCCTTCCAAAGAAATCCCAGGGCTGATCTTCTTCAGAATGGACTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAACACCACAGTTCAAAAGCAGCAATTCTTCAGCACTCAGTCTTCTTCACAGTCCAACTCTCACATCCATACATGACCACAGGAAAAACCATAGCCTTGACTAGACGAACCTTTGTTGGCAAAGTAATGTCTCTGCTTTTGAATATGCTATTTAGGTTGGTCATTACTTTCCTTCCAAAGAGTAAGCGTCTTTTAATTTCATGGCTGCAATCACCATCTGTAGTGATTTTGGAGCCCAGAAAAATAAAGTCTGACACTGTTTCTACTGTTTCCCCATCTATTTCCCATGAAGTGATGGGACCAGATGCCATGATCTTCGTTTTCTGAATGTTGAGCTTTAAGCCAACTTTTTCACTCTCCACTTTCACCTTCATCAAGAGGCTTTTGAGTTCCTGTTCACTTTCTGCCATAAGGGTGGTGTCATCTGCATATCTGAGGTTATTGATATTTCTCCCGACAATCTTGATTCCAGCTTGTGTTTCTTCCAGTCCAGCGTTTCTCATGATGTACTCTGCATATAAGTTAAATAAACAGGGTGACAATATACAGCCTTGACGTACTCCTTTTCCTATTTGGAACCAGTCTGTTGTTCCATGTCCAGTTCTAACTGTTGCTTCCTGACCTGCACACAAATTTCTCGAGGCAGATCAGGTGGTCTGGTATTCCCATCTCTTTCAGAATTTTCCACAGTTAATTGGCTATACCCCAATACAAAATGGGCTTGCCTGGTGGCTCAGATGGTAAAGAATCTGTCTGCAACGCAGGAGACACAGGTTCAGTCCCTGGGTCGGGAAGATCACCTGGCGAAGGGCATGATAACCCACTCCAGTATTCTTGCCTGGAGAATTTCATGGACAGAGGAGTGTGGTGGGCTACAGTCCATAGTGTCACAAAGAGTTGGACATGACTGATCTTAATGACTAGACAATGTAAAATTAAAAAAAAAAATTTAATGGCCACACAAAAATTCACCAGTTTTGATGTTTTGTTTTTTTTTTTAATTTCACAGGCAAAATTTTATCTGTCCCAAACACTGTTACACCACACTTCAGTAACAGAAGCTGCAGGTTATAGTCTACACATATATTTTCTCCTTGTTTTTTAATTAAAAACAATAGTAGCAATCTAGACACATGGCTTTCCTGTTTCAATCCCCACCCTCCTTTGTCATGAGTTACAACTCCATGAATGGGTAACATAAATGGAAGGGTTCCATTGTTCAGTGATGCTTCTGTGAGGTGCTTACTTTCACAGATAAGGTGTATACCCTTTTCTCTTCCACTTCCATTTCTCTATCTGCCACCTGGGATGTGGGTGGGAGACTGGGATTCCAGCAGATAGTTTGAACCATAAGAACAGGAGCTGCTGAAAGGCATGGTGGAGTAATTGAGCTGGAAATTGCCTGGGACTGTTCTCTCAGTCTTGGATTTTCTATCTCTGTGTTTTAATCAATAACAAAAAAAGGGCACATCTCATTTTTATATTAGCCAAACCTAATCTCAATTGATAAGCCTTCTTAAGAATTACTATCAGTTTAGGGAGATCATATATATAAACATCTGGCCTTACATCAGTTCCAGCTCATCTCTGAAAATTGTACCTGAAAATTGAGTCATATAAACTAAAAATACTTTGACTATGTTTTCTGTTAAATGCTTGATTTTTAAAGCACATCCCTCCCCATTTTTAAGGCAAGCTGCATATTCAGCTCTGTTCATAAGTACATTTTAAGGAAAAGTAATTTAAAAGCTTTTGTGTTTAATGATACAAATAAATAGCAATCACTTTTTAAAGATGTTGTGAGAGCCAGTTGGACATGACTGAGTTCAATGACTAGATAATGCAAAATAAAAAAATTTTTTTTTAATGGCCACACAAAATTCACCAGTATTGATAAAGTTTTTTTGTGTTTTAATACACACTGATATGACAACTCACAAAAACAGAAAAGAATATCCAGGAGGGGTTATTCATCTCTGTACAGCTCCCACATCTACACAAGTACAAACCTGAGCTCACAGGTGAATACAGGAAGAACGCAGCCTTCTCCCCACAAGCAGCCTCGCCCCCCTCCTGGACTCAGGTCATGCCCTCCCTGCCAACTCCCACAGACCCAGGGCGCACCCTGGCCCTGCCACTCAGTCCCATCTAAGACTAGCTGCAGCCCAAACCCTAAATAGGTGATGACTTTGCCCACTTCTTTGTGTGCAAGATTCCATCATAGAGTGAGAGAGAACTTGGCCCTTGTGCCTGGACTTCTCTCAGCTCCCTCACCTCCCCATCCCCACCCCAGGTAGTAAGGACTTACTTTTTCCCTTTATATAGTAGGGGGGCTAACTCGGTTGATACAACCAAGTACATGTGAGAATAACAGTAGCTTAGATAGTTAAACAATACTTTATGGCCAAACTTTATGAGCAGTGAGGGCTTAACAAGATTTTAACTGAGAAACTGGTGAGGACAACTTGCGTAGATAAATACACAGTACTAGTGTTCCCTTTGTCTGCTGTAAATTGTGACAGCTGTTTTTTCTTCACATGGTTCTGTCATTGCTGGGATTCAG
Seq C2 exon
ACGATCTCTGAGTTTGAAAAGGAGATAGAGTTACTTCAGACACAGAAGATAGACGTGGAAAAACATGTGCAGTCCCAGAAAAGGGAAATGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003763:ENSBTAT00000004905:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.148 A=NA C2=0.250
Domain overlap (PFAM):
C1:
PF131661=AAA_13=FE(27.1=100)
A:
NA
C2:
PF131661=AAA_13=FE(14.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development