RnoINT0097309 @ rn6
Intron Retention
Gene
ENSRNOG00000008356 | Myo5c
Description
myosin VC [Source:RGD Symbol;Acc:1309994]
Coordinates
chr8:82225326-82227547:+
Coord C1 exon
chr8:82225326-82225506
Coord A exon
chr8:82225507-82227453
Coord C2 exon
chr8:82227454-82227547
Length
1947 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
3' ss Seq
TGGGTTTGGCTCTGCTTTAGACC
3' ss Score
5.65
Exon sequences
Seq C1 exon
ACTTCTTGAAAAAAGTTTTGAGCTGAAAACACAAGCTTATGAGAAAGAGATAGAGTCTCTGAGAGAAGAAATTAAAGCCCTCAAGGATGAGAGGACGCAGCTGCACCACCAGCTGGAGGAGGGACGGGTCACCTCTGACAGCCTGAAGGGGGAGGTGGCCCGTCTAAGCAAGCAGGCAAAG
Seq A exon
GTGTGTGCTGCCTTCTAGATCCTCCAGTGACTCCCACAGATCTACACAGAAACAGTGGCAATGTCTTGGATTCAGGGTACGGGGTGGGGGGTGCCCCAGGTGGACTGTTCTTTTGTTGAGAGATTTATTAACACCATAGAGGGTTTCTAAAGAGAGCTCAGGGGAGGCATTGCTAGGGGTCCCTTCTTACAGATTAAGGCAAAATGAGGAGGTTGAGTAGCCTGTACTCCGGTTATCATGGATTCCTGGGTGGCAGGAGAGGGGTTAATGGTTCAGCCATGTAGCTAAGTAAGGTGTGTCTATCACACAGGAGGTGCCCCTGTAACCCCATCTTGCCTAGGGTGTCTGGAAACAGCCTTTCCCCAAGGAAGAATGAGAGTCTGAATCACAGAGAGTGCTTTCTTTTATAGCAGCTGAGAGGGTAGAAAGAGAAAGGGGTGCTGAGGGGTGAGTGGTCCTGTAGCTGCTAGCCCCATCTTACTTTAGCATTTCCGTGTTCCCAAGGGATCAGACGACAGGAGCATCCATGCAGGCTGAAGGCTCACAACACCCGGGTGCTCTATTCTCTCAAGTTCCAGCCTCTGGGCTTTCTGAGAGTGTATTTCATATTTGAAAAGTCATCTTCTAACACTCTAAGATTGTAGCTATGCAGTTCTTTAAATAGACAGACTAAAAGAATACTTCCTATTTAAATTATAAATTCAGGTGAACCCTTATTGTTTATCATGCTATAAACTTATGAACACCTGTACTGAAGTGAAATTGTTGCCTTCTGCCTTTTATACTGTTACCCAAAATTCACATGCATGATCAGGAGGGACCTCAGGTAGGCTGGGGGACACAGCCTGCTTAGTAGACTGCCTTTCTAGCACACAGGAAGCCCTGGCCTTGAACCCCAGAACACCAAAGTCAGAAATAGTGTTGCTCTTCTGTAATTCTAGCATGTGGGTGCTGGGAATCAAGCCCATGCCCTTTGGAAGAGCAGCCAGAGCTCTTAACTGCAGGGCCATCTCTCCCGGCTGACCTTAAACTGGGGGAATTGTGAGCCTGCACTTGGATGCTTTCAGAGGTCTGGCTTTCCAAGACCTTAACCATCATTAAGCTGTCTGAGGAATGTAAGGAGATATAAACATTACCTGAAATATGTAAAGAACCATAAAGAGAATCACGGCTTCTGACTGGGCAGTCCCGTGAGCTTGGCACATGATCCCAAATTCACCTTTTAACCTTCAATTCAGCATAGCTTCGTTTTCTAACCATTGAGGGTTCACCTTGTTCTACTCACTTCAAGATCTGTTAGAAGGACCAGGTGCCTAGGGCAGCACTCGATGTTTGATCCCCCTCCTCTCCGAGTTGGATGCTGGGGCCTGTCAATACTCAGAGTAACAGAGTGTTTAAGGGAAGGGGGGTGATCACCCCTGCAACCCCTGAGAATATTTCTGTCTTAACTACAAAATACACAAGCCTGAGGTATTCCTTGAGATGATCTTGCAGTGTGAACAGCGGTGGATTCAGCCCATTTGAAAGCAGAGGTGCTTATAAGAAACTGTCCCCTGTGATCTTCCCAAGGTGCCTAGCCTCTGGTCTCTGTGATTAGTCCTCCTCTCAGCCTAGCTGAGGACAAAAGCTTCCTAGGAAAGAAATTACCTTCTGCCTTCCCCACCTGTGACATTACCTGACCTGCCCTCTGCCCTTCTCAAGGCAAAATTGTTTTCTTCCTTTACAATAGGGGAGCTAATTCCTGCTGCCAGGTAGGCCTGCAAACAGTTGTGTAGTTGAGCTGCTTCAGGGCAAGCTGTGAGGCTGTCTGTGAGAGCGAGATAAGATTCCAGCTAGGAGGCTGCGTGGAGGCGGCAGGCCACCATATGCTGTGTGATGGGTGTGCCCTCGCCTGATGGGAAGTGTGTAACGGCTGTTTTCTCTGCACTGGGTTTGGCTCTGCTTTAG
Seq C2 exon
ACCATCTCTGAGTTTGAGAAGGAGATAGAACTGCTGCAGGCACAGAAGATAGATGTGGAAAAACATGTGCAGTCACAGAAGCGGGAGATGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008356:ENSRNOT00000011768:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.279 A=NA C2=0.250
Domain overlap (PFAM):
C1:
PF131661=AAA_13=FE(25.1=100)
A:
NA
C2:
PF131661=AAA_13=FE(13.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTTTGAGCTGAAAACACAAGCT
R:
CTCTCATCTCCCGCTTCTGTG
Band lengths:
262-2209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]