GgaINT1018784 @ galGal4
Intron Retention
Gene
ENSGALG00000004641 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr10:8351953-8352821:+
Coord C1 exon
chr10:8351953-8352133
Coord A exon
chr10:8352134-8352727
Coord C2 exon
chr10:8352728-8352821
Length
594 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
GTAATTTCTGTCTGATTCAGAAA
3' ss Score
8.17
Exon sequences
Seq C1 exon
GATACTTGAGAAAAACTTCCAGAACCAGAGACAAGACTACGAAAAGGAAATTGAATCGCTCAAGGGAGAAATAAAGGTTCTCAGAGAAGAAAAAACGCAGCTACAGCAACAAATTCAGCAAGAGATGAGCATTCAGGATGACCTGAAAATGGAAGTAGGACAACTTACAAAACAAGTGCAG
Seq A exon
GTAAAGCATGACTCACTTCATTTTGGAGTCCTTCCTGGGTAAAGCAAGTAGGCGATGGAGGTGTTTTATTTATAGATTATTTTGTTTTGTTTTGTTTTTTCTCCTCAGTTTTGAAGGAACTGTAGCCAATAAGTCACATTTGATCCAGCACTGTGTTGCATCCTTCTCATGTAGTAGTCAACATAAGTTATTGTTCACATAAAAATTTCAAGGGTATAATTGATAGTGCCTGAATGTTTATACATTTAAATGTGTGGACCTTTTTCTTCTTTTTCTTCTTCTTTTTCCCTGAGGGCATCAATTTCTTATGTTTGTTTCTCATAACTACAGTTTATAATCTGACTGTGAAAATACTGTTTTTGTGTGAAGTTAGATTTTTTTTTTCCTATGAGTCACATCCATGACACAAATACATGATTTTTCACATCAAATTATTGTTCAGCAATGATGCCTAAAAAAACAGCCACTTTAAACACATTTAAAGTCTTCTGGCTCATGATTTTGTTGTTATTAATAACTTTCTTTATGATTTAACTGTTACTTAGCCCTTCTCATTCACTTTCTATTGCATTCTGTAATTTCTGTCTGATTCAG
Seq C2 exon
AAAATACCTGAGTTGCAAAAGGAAATTGAACTGCTGCAGACACAAAAATTGGATGTTGAAAAACAGGCCCAGTCACAGAAGAGGGAGATGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004641:ENSGALT00000007393:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.213 A=NA C2=0.375
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTGAGAAAAACTTCCAGAACCAGA
R:
CCCTCATCTCCCTCTTCTGTGA
Band lengths:
272-866
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]