BtaINT0098212 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003763 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr10:58247967-58249989:+
Coord C1 exon
chr10:58247967-58248030
Coord A exon
chr10:58248031-58249820
Coord C2 exon
chr10:58249821-58249989
Length
1790 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
CTTCCTAATCCTTTCCTCAGGAC
3' ss Score
9.73
Exon sequences
Seq C1 exon
GAAAACTAGAAGAATTGTCAAATCAGTCGAATCACAATCAAGAAGAAGAAGGAACACAGAGCAA
Seq A exon
GTAAGTGTCAACCTGCATGTACCTCAAGCCCACACTCATGCAATGCTTTGCTTTTCTGAAATTGTGGGAGATACCAAAGAAGGTTATTAAGCCACAAAAGCAAGATATTCTTCAGGTGTAAAAATAAATGCTTGTGTACACACACACCCTCCTCTGGGATAATGTACAAGAAATGAAACCAACAAAACATTGGTTGCCTGCAGGAAGGGTAACTGGGTGACTGGTGCCCGGAAGATGGAAGAGACTTGCTTTTCACTGTGTGCCCGTTTATACCCTTAGAACATTATGCCATATGCATAAATTATATCTTCAAAAAACTGATAAAATAATATCGTATGAGAGAGGACAGTGTTTCTCTCAGCAGGCCACTTAGGGTGAGGCTTAAAATCCATTTTGATAGAGAATCTTCATTTGATAACTGCTCCCCCAAATTACATCCTGACCAACAGAGCCCCTGGTGGAACCTTGTGAGAAAAATGTTTTGTGATGAGCTTGTTGAGATACTTTGTGTAAAATTTTTTTGATGATGATCAAAAATTATTTTAATAGAAATTTTAACCATTTCTCTGGAGAAGCAGATAAAAGAATAATCAGTGGTGTTTTAATTCATTTAAAACGCACATTGAGCTTTGACAAATACATGAAGGTGCGAAGGTGAGTGAGGCATTTGCCCAAACCCTCAATTTCCTCAGTGTCTTGTGTTCCAAGATCCTTACCTGTGTAATTTACTTCCACTCATCACTGAACTTCTTCCAGTCAATCAGAGTGGTGAATTCCCTTAGTCATATTCATGTACAGACACACAGTGCGTGGGTTCTTCCCTCTCTCTTAGAAATATAGAAAGATTATGCATTTCCTGCTGACTTTTCCATCATGGAGAAGTTGACAAACATTCATAGAATCACTGGATCATAACTGTAAAACATTTTTAAAGCTTTATTTTGATTCAATTCTTTCATAATAAAATCTAGATTAAATTATTTATGTGTAACTCAATTTAGAATTGCAATTTTAGAGCTTTACATTCATTAATAGGGTACCATTTTATATCCTAGTGTTTTTCCATACCACATAACATTGCTCATATCAAATAATATTTTTATAGCTTAGATTAGATTGTGCTTTTGTATGGTAAAAATATTTTGGAAAATTTTATAATCTTTAGAAAAGTCAGTTACCCTGACTTCTTCACTGTGAGTTTTATTCACAATCATTTTGTTATCCTAATCAGATTAAAATCGACTCTCATATTATTATTTATCATCAGAGGAATAGATGTCAAACTTGTCATTCAGGTTCCATTCCAATTTAAAAATCCTCAAGATACTTAATTTCAAGAAAAATAAATAAACACTCTACATCCCAGAGAGAATTTCTTCATTGGGAGGGTAGGGGCCAGGTGTAGGAAAGTGGTGGGCATCATTTTGGGACTCTGGATGGGGTCCCTTTTCTTCTCTCTCTGATCCCTGGATTTTTGAGTATCTGATCCCAGGCTTTTCACAAAGGAGATAATGACTGGGCTTTTGGTCATAAGGGTGTGAGTGGGTATGGATGTCTTATGGGAGCCATCAAGGGGTGTGGGCGGGTGAGGATGAGAAATTTTTATCAGGTTAAGAGACTGAAGCAGCTGTGGACTTCTATACCCCACTAACCCTGGTCTCTTCCCCCACACTGTGAGCACTCCCCTATTCAGGTACAATTTGTTTTACACGTAAGGTGGCCAAACTATTTTTCCACTGATTTTTCATGATGATCAAATTTATACCAAAACTTCCTAATCCTTTCCTCAG
Seq C2 exon
GACCATAGAAGCCCAAAATGAAATACATACCAAAGAGAAAGAGAAGCTGATGGATAAGATTCAAGAAATTCAGGAGGCCAGTGAGCACTTGAGGAAACAATCTGAAACTGAAAATGAAGTCAAGAGTAGTTTCCAGCAGGAAGCATCTCGTCTCACTATGGAGAAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003763:ENSBTAT00000004905:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF131661=AAA_13=FE(9.7=100)
A:
NA
C2:
PF131661=AAA_13=FE(25.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTAGAAGAATTGTCAAATCAGTCG
R:
CCTCTTCTCCATAGTGAGACGAGA
Band lengths:
230-2020
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development