Special

HsaINT0108856 @ hg38

Intron Retention

Gene
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr15:52218519-52219822:-
Coord C1 exon
chr15:52219759-52219822
Coord A exon
chr15:52218688-52219758
Coord C2 exon
chr15:52218519-52218687
Length
1071 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
TTCCTCCCTCCCTTTCTCAGGGC
3' ss Score
12.03
Exon sequences
Seq C1 exon
GAAAACTAGAAGAATTGTCTAATCAGTTACATCGCAGTCAAGAGGAGGAAGGAACACAAAGAAA
Seq A exon
GTAAGTGTAAATATGTGTGTACCTCAAGTTCATGCTCGTGTAATGCTTTTCTGAAACTGTAGAATATACCAAGATGTGTTACTAATGCCAAAAAGCAAGATGCTAATTAATATATATGACATATTGCCATTCTGATGGGAAGGAAAGAAATATGTGTATGTACAACACACTCAGCAGCAGCAGCATCTCTGGGAGATTGTTAAGGAACAAAACATTGGTTGCCTCCAGGCAGTTGGTTGCCTTCAGGCTTGGTGACTGATACACAGAGGAGGGGAGGACACGTACTTTTCACTGTATGCGTACACTTTTGTACCCTTGAAATGCTATACCATGCACTTGAATTATCTGTTCAAACAACAGATAAGAGTGTGTGAGAGAGGACGGTTTCTATTAGCAGACTATTTAGGGTAAGAATTAAAAGCCCATGTTGATGGAAAATCTTCATTGCTAATCCCCCCAAATTTCCATCACGAGACCAATAAAGGGCCTCGTGCCCTGGCAGAGCCTTGTGGGGAGAATGTTCTGTTTTGTTGCCAACTTGTTGAGACACTTATTTTTCCAAAATAATAAATGGGCACTTGACATCCCCAAGAGCATCTTTAGTTATGTGACTTTATCAGTAGGATGAGGACCCAAAGTAGTGGAAAAGGAGCGAGGCACCATTTTGGAACTCTTCTAATGGTCTCTCCTCCTCTCTTCTGTCTGATCCCTGGCTTTGTGAGTGTCTGGTCCCCAGGCTGGTCACAAAGGGGATGACTGCTTAGCTGTCACAGCGTATGGTGGGCGTGGATGTCCCATGGGAACAGTAAGTGGGGCTGAGGTTGGGTGGAGAATGGAACTCTTATTGGGGGAAGGAGACCAGAGCAGTCCATGGACAGTTTTCTATCCCAGCCAGTCCTGGTCTCTTTTCTTTCCCCTGGAAGGACACCCCTATTCGAATACTATTTGCTTTACACAGAAATTGGCCAAGGTGTTCTTCCATCTTTGGAAATATCAGCACTTGCTATGACAGTGAGTGACTTCTCCATGACCGTCATACTGATACCAGCCATTCCTCCCTCCCTTTCTCAG
Seq C2 exon
GGCCTTGGAAGCCCAAAATGAAATACATACCAAAGAGAAGGAGAAGCTGATTGATAAGATTCAAGAAATGCAGGAGGCCAGTGACCACTTGAAGAAACAATTTGAAACTGAAAGTGAAGTCAAGTGTAACTTCCGGCAGGAAGCATCCCGGCTCACTTTGGAAAACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128833:ENST00000261839:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=1.000 A=NA C2=0.561
Domain overlap (PFAM):

C1:
NO
A:
NA
C2:
NO


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
ALTERNATIVE
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
LOW PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAATTGTCTAATCAGTTACATCGCA
R:
CTGTTTTCCAAAGTGAGCCGG
Band lengths:
222-1293
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains
  • Pre-implantation embryo development