GgaINT1018791 @ galGal4
Intron Retention
Gene
ENSGALG00000004641 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr10:8356389-8356693:+
Coord C1 exon
chr10:8356389-8356453
Coord A exon
chr10:8356454-8356656
Coord C2 exon
chr10:8356657-8356693
Length
203 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
3' ss Seq
CACTTCCTGTCTACTTCTAGAAC
3' ss Score
9.24
Exon sequences
Seq C1 exon
TCTATTGCTAAAGAGATATCTAATCGGCTGCATCATGAGCCAGAAGGGGACAGAACACTAAGACG
Seq A exon
GTAAGTAGGTTCCCTCTCCTCTCCTCTCCCTTAATGTAAGAAGTGCCATAAGCTGGGAGTAATAAACTCACAGTTGAAGTTCCACATCCAACTTATGATCCACCCTGTAGCACCGAGTACAGCCAACAGATGACAGGTAAGCGTGATGTGATTGTGCTTTAACAGAAGAAGAGTAAAAGACAACACTTCCTGTCTACTTCTAG
Seq C2 exon
AACAAATGAAGTTCAGAACGAAGCAGACATGAAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004641:ENSGALT00000007393:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]