RnoINT0097316 @ rn6
Intron Retention
Gene
ENSRNOG00000008356 | Myo5c
Description
myosin VC [Source:RGD Symbol;Acc:1309994]
Coordinates
chr8:82231797-82232131:+
Coord C1 exon
chr8:82231797-82231860
Coord A exon
chr8:82231861-82231962
Coord C2 exon
chr8:82231963-82232131
Length
102 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
GCCCCTCGTCCCTTCCTCAGGGC
3' ss Score
10.53
Exon sequences
Seq C1 exon
GAAAGCAGGAAGAACCATTCAGCCACCTGAACCGAGGCCTAGAAGAGGAGGGAAGGCAGGGCAA
Seq A exon
GTAAGTGTGCTGGTGGGAACTGGGCAGGCTACTTCCATCCACTCACAATCACCCACGGGAGGTGCTCACACCGAGGCCCAGAGCCCCTCGTCCCTTCCTCAG
Seq C2 exon
GGCCGTGGAAGCACAGAGCGAGACGCATCCGGAAGGGAAGGAGAGGCTGGTGGGTAAGATCCAAGAACCACAGGAGGCCATCAAGTTCCCAAAGAAGCAAGCAGAAGCTGAGGAGGAAGTCGAGAGTATTCTCCGACAAGAGGCGTCTCGGCTGTCTTTGGAAAACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008356:ENSRNOT00000011768:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.877
Domain overlap (PFAM):
C1:
PF131661=AAA_13=FE(11.2=100)
A:
NA
C2:
PF131661=AAA_13=FE(29.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGAAGAACCATTCAGCCA
R:
CCTGTTTTCCAAAGACAGCCG
Band lengths:
229-331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]