BtaINT0098227 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003763 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr10:58204856-58208630:+
Coord C1 exon
chr10:58204856-58204962
Coord A exon
chr10:58204963-58208364
Coord C2 exon
chr10:58208365-58208630
Length
3402 bp
Sequences
Splice sites
5' ss Seq
AGCGTAAGA
5' ss Score
6.21
3' ss Seq
TGTGTCTTTTGTTTCTGAAGGAG
3' ss Score
8.03
Exon sequences
Seq C1 exon
GTTTCAAGGAAGATTTTCAGATGGACGTTTTTAAGGTTCTGGCGGCCATCCTACATCTGGGCAATGTACGGATTGCAGCAGTGGGCAACGAGAGATCAGTGATCAGC
Seq A exon
GTAAGATATGTGTTTGTTTCCCCCATCCTGTGCTGGGAGGATGATCAGCAGAAGCTCTCAGGGTTACCCTGCTTTTGTATTTCAGCACCAGGCACACTGGACCTACTAGGGAGACTAGTTTAACAGGAACAAGGAAGATTGGGGTTTCCATGCGTTACCTTCAAAGAGGAAAGCTTCTGCCCCTTGCAACAGCAGAGAAGGGGGAAACACAACCCCTGTGTGGTTTCCTTTTATTCAACAGATTTTTACTGAAAGCCTGCTATGTGCCAGACACTGTTGTAGGCTCTGGAGAAACATCAGTGAACAAAACAAAATCGGAAGGCCTTCATGAAGCTTTTGATCAGGGGGAGAAAATGGAGGAGAGGAGACACAGTAAAAGTTATAGGCTCTGGCAGCTGGCAATAACCATTAAAAATGAAAATAGGGGGCTTCCCTGGTGGCTCAGTGGTAAAGAATCCACTTGCCAATGCAGGAGACGCAGGTTCAATCCCTGGTCAGGGAGGATCCCACATGCTGCAGAACAACTAAGCCCGTGGACCACAACTGTTGAGTCTGCTCTAGAGTCCAGGAACCACAACTGCTGAGCCTGAGTAGCACAGCTACTGACGCCCACACTCCCTAGAGCCTGTGTTCCTCACCAAGAGAAGACACCTCACTGAGAAGCCTGCACACCGCGACTAGAGAGCAGCCCCTACTCACCACAGCTAGAGAAAAGCCTGCACAGCAACAAAGACTGAGCACAGCTCAAAATAAAAATAAATACAAATTATTTTTTTAAAAGAAGGAAAATAGGGACTTCTCTGGTAGTCCAGTGGTTAAGACTCCACACTTCCAATGCAGGGAGTGTGGGTTGACTCTCTGGTCAGGAAGCTAAGATCCCACATGCCACAGGACATGGCCGAAAATTTAAAAAAGGAAAGTATAGCAGAATAGGTGGGGACAGGCTGTGCCTTTTGAATCGGGCATCCAGAGAAAGCCTTTCTAATTCAGTAAGGAAGTGAAATTGTGTCTATATCTGGAGGAGGAATATTCCAAGTAGAGGGAACAGCAGGTACAAAGGCCCTTGGGCAGGAAGTGTTATTGAAAAAATAGCCAAAAGGTTGGTAAATGCAAAGACAGTGAGAGAAAGGAGAAGTGGCGGGTGAGGTCAGAAACTGTGTATGGGGGAGGGGCACAGATCATGAAGAACCTCAAGGGCTCTGGAGGTGTCTTACCTCCTGACACGTGCCTGAATGAAACCCCAATGGTGCTGGCTTCCTCTCTGGAAATAGGCTTCCCTGTAAGTTTTGTGACCGATTTCATCGTTTCATGGACACAAGATAAGTTTCTGTATATGTGTGTTAGGCAACAAATGCTATGTTTTGGTGTGAGGTATGTGGTTATCCTCAGCAATATCCATGTAACGAGTACAGTCACATGTTAACAATGTTTCTGTGAAATGCAAAATCTCCTTGCTGTTAAAGCTTTGTACTAACAATGTGTGTCTTGGTCAATTCCAGTTGTCATAACAAAATATCACAGGCCGGGTGGCTTAACAACAGAAATCTATTTTCTCACAGTCCTAGAGTCTGGAAGTTCACAATCAAGGTGCCAACACAGTTGAGTTCTCAAGATGCTGGCTTGCAGACAGCTGCCCTCTTGCTGTGTCCTCACAAGGCAGAGAAAAGCCAAGCTCTATTCTCTTTCCTCCTCTTATAAGAACACTAATCCCATCAAGGGACCCCATCCTCATCTAAACCTCATTACCTCCCTAAGGCCCCACTTCCAGGTTAAGACTTCAACACATGAATTTTTCATATGACTGAGACATTCAGTTTTACAACAATGCCTCCAGAACAACCGATGAGAACAATTGTTAATTTTGTACACCTGTTCATTTCTCAGCTCTGGTACCTACGGTTTAAGGGGAGAGAGCGCTGAGCAGATGTGGAGGATGTGTTTTTTGGCTCAGTGCCTCAGTCCTGTTGCCCTGTAACCAGGAAGTAATTCTTCAGATTATCACACTAAGTGCCTTGCCCCATCCCCACCAGTATCCAGTCCTTGCAGAGTCAGTTCACAAAGGACTGGGAAGTTTGGAGGAGGTGATGACAGCCCTGGAAGATGTGCGGGGTAGTTCTCCCACTGGGTCCTGGCTCATTTACCTCAGAAATGGGCTTCTGCACTTTTTCTTCTCAAACTCACATAGACTGAAGATACGACTTTCAAATACCCTGGCTTTGAACTCTGTTCTGTGAAGTTTGTTGTGAAGGTAGCATTTTGGAGAAGGAATTAAAATTGATAGACTAAAAATCCTTTGTCTATCAATCTTAGAAGACAAATCCCACACACAAAAAATGTCAGATCTTTGTAGAAAATAATTTTCATTCATTTGCATCAAGAATGTGAAATATTGGGCAAATTCAATCTGAATGAAGCCATCTTACATTTTAAAACTTGCTGCCCCTTTGCCTTTCCCCCTATAGCTGGGTGTTTTTGTCTCAGAAGGTTGGGTTCCTGCTTAGAAGGAAGGAAACCAATGGCTCAACCAAACCTCATAGTCCTGACATGCTTTATTTTGTTGTGATATTGGTCAGAAGGGATGTGGGTGGGCAGTAGGGAGGTGGTAGGACTTTTTAGGTTGTTAGAGCCACTATAACCTGATGCTTTTTAAATGCAGTCATGTGATTTTCCCAATTGACTGAGATGCTGTCTACAGATGAGCCCATCTGGGAAGTTTTCCCTGCCCAAGAGGAATGGTGGTATGCAGTCACATGGGATTGCATCTCCTTGCCTAATGACAGGGACCCCTAGTTCCTGCTGCCTAAAGCAGGAGCAGACCTTTCCTCGTCTGCTGGCCAGTGGGGCAGCTCTCATGCCCAGGCTTGGGAGAGAAACAAGATTCACTTTGTACATCCAGAAGTCCCCCACCACAGCCCTCACGTTGGCTGGAAAACCACTTCAGTTCAGGGAGCCCACCACGTTCTCCCTGACAACACGCTGAGGTCCCTCCTGGGCCAGACCCCACGCTGGGCAGACCCCAGCTACACAAAGAGTTACAGGGCAAGTGTTGGCTCTGACAGGTGGCCTGGGTGTGATACAAAAGGGCAGAGAGAGGCCTTAAGGCTGTGTCCACAAGCACGGGAGAGGGGGGAGGATTGCTTCTGTGGCCTAAACATCACTACTGACATTCTTTGGCCAGAAGGAAAATCTGGGTAGGACACAGCCTGGGATCTCCTGGCATCACCACAGCGGTGCCCAGCCTAGGACCAGGTGCAGGCTCCATGCCCCCACGGGCCCTCCTGCTTCACTCCCAGCCCTGGCTCTGTGTTGTGAGGCCTGATCGTGCCTAGGTCGAGGGGCACAGCTGAGTGGGCCAGTGCCAGTTTAGATGGCCTGATGGGGCTGTGTCTTTTGTTTCTGAAG
Seq C2 exon
GAGGATGATGATCACCTGGAGGTGTTCTGTGAGCTCCTGGGCCTGGAGAGTGGCAGAGTCGCTCAGTGGCTGTGTAATCGCAAGATCGTCACAACCTCCGAGACAGTGGTGAAGCCCATGACCAGGCCCCAGGCTGTCAATGCCAGGGATGCACTGGCCAAAAAGATCTACGCTCACCTGTTTGACTACATTGTGGAGAGAATTAACCAAGCCTTGCAGTTTTCAGGCAAGCAGCACACTTTTATTGGTGTTTTGGACATTTATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003763:ENSBTAT00000004905:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.2=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(13.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development