Special

DreINT0100952 @ danRer10

Intron Retention

Gene
Description
myosin VC [Source:ZFIN;Acc:ZDB-GENE-131127-196]
Coordinates
chr25:4667929-4670738:+
Coord C1 exon
chr25:4667929-4668035
Coord A exon
chr25:4668036-4670472
Coord C2 exon
chr25:4670473-4670738
Length
2437 bp
Sequences
Splice sites
5' ss Seq
GGTGTAAGA
5' ss Score
3.6
3' ss Seq
TTACTCTGCTCCTTCTCCAGTCC
3' ss Score
9.11
Exon sequences
Seq C1 exon
GTCTCAAGGAAAACTTTCAGACTGACGTGTTTAAGGTGCTCGCCGCAATCCTGCATTTAGGAAATGTAATAATCAAGGCAAAGGACCCAGAGAAATCATTCATCGGT
Seq A exon
GTAAGAAATATTCATCCGTTTACTCGTAGACAGTCAGTGTTGGGAAAGTTACGTTTAAAAGTAATCCATTACAATCCTGCGTTACTTCTTTCTAGCTAAATAAGTTACTTAGTTACTTTTTAACAAAAGTAATGTGCTACATTTGTGTTGCTTTTTTCATCTGTGCTGGACTTTTTTTATAATAACAAAAAACATCTATTATTCTGATAAGTTACTTTTAAAAGTAATCCATTACAATCTTGTGTTACTTCTTTCTAAAAGTAACTAAATTAGTTACTTGGTTACTTTTTAACAGAAGCACTGTGCTACATTTGTGTTGCTTTTTTTCAGGGATGTACTTGCTTGTTTTTTTAATAATATCATAAACAAAACATCTATTTTGCTGATAAGTTACTTTTAAAAGTAACCCTTTACAATCTTGCGTTACTTCTTTCTAATAGTAACTAAATAGGTTACTTAGTTACTTTTTAACAGAAGTACTGTGCTACAATTGTGTTGCTTTTTTCATCTGTTCTGGCCTTGTTTTTTCTTTATGATAACAAAGAACATCTATTATGCTGATAAGTTACTTTTAAAAGTAATCCATTACAATTTTGTGTTACTTCTTTCTAAAAGTAACTAAATTAGTTACTTAGTTACTTTTTAACAGAAGTACTGTGCTACAATTGTGTTGCTTTTTTCATCTGTTCTGGCCTTGTTTTTTCTTTATGATAACAAAGAACATCTATTATGCTGATAAGTTACTTTTAAAAGTAATCCATTACAATTTTGTGTTACTTCTTTCTAAAAGTAACTAAATTAGTTACTTAGTTACTTTTTAACAGAAGTACTGTGCTACAATTGTGTTGCTTTTTTTAACAAGGATGTACTTGCTTGTTTTTTTAAATAATATCATAAACAAAACATCTATTTTGCTGATAGGTTACTTTTAAAAGTAATCCCATACAATCTTGCGTTACTTCTTTCTAACAGTAACTAAATAAGTAGTTACTTTTTAAGAAAAGTAATGTGTTGCGTTTTTCTGCTTTTTTATGTAAAATGGACTTGCTTGTTTGTAATAATAACATAAACACATTTTCTATTTTGCTGATAAGTTACTTTTAAAAGTATTTCTATACAATCTTGCGATACCAATTTCTAAAAGTAACTAAATAAGTAACTTAGTTATTTTTTTAACAAAAGCAGTGTGCTACATTTGTGTTGCTTTTTGTATACAAGATGTACTTTCTTGTTTGTAATATTAACATAAGCCATCTAATATGATGATAATTCATTCATTCATTTTCTTTTTGGCTTAGTCCCTTTATTAATATGGGGTCAACACAGCGGAATGAACCACCAACTTATCCAGCATATTTTTTATGCAGCAGATGCCCTTTTAGCTTCAACCCATACACACCCATTCACACACGTACACTACGGACAATTTAGCTTACCCAGTTCACCTGTAGTGCATGTCTTTGGACTTGAGGGGGAAATCGGAGCACCCGGAGGATACCCACGCCAACTCAGGGGGAACAAGCAAACTCCATACAGAAATGCCGAATGACCCAGCCGAGGCTCGAACCAGCAACCTTCTTACTGTGAGGCGATTGTGCTACCCACTGCGCTACCGTGCTGCCCAGTTATGCTGTTCAGTTACTTTTAAAAGTAATCCATTAAAATCTTGCATTACTTCTTTCTAAAAGTAACTAAATAAGTTACTTAGTTACTTTTTAACGAAAGTAACCTGCTACATTTGTGTTGCTTTTTTCATCTGGGCTGGAGTTGCTTGTTTGTAATAATAACATGAACAAATGATCAATTTTGCTAATAAGTTAGTAAACATGCATTAGTAACATTGCAACATGCAACAGTTTACATTGAACTACCCTTTAGTAAACACTGTTTATGCATCATACACTCTGAAAATTAAAAAGTAATGCATTACTTTACTTAGTTACTTGAAAAAGTAATCGGATTACATAACTCAAGCTACTTGTAATGCATTACTCCTAACACTACAGATAGTATCAGATAGTATCAGAACACTACAGATAGGATCAAAGATTATTTTGTAAATTAGGATAAGATAGTATGTCTCAGGGTTATTTAAGGCCTGGGAAAGTAAATAAAAACAAACACAGGTCCTTGAAAGTGCTTAAATTAAATTGGAATCATAACTTGTGTATGGTGTTGTTTCAACAATTGTGCTGTGCTGCAGTCAAAAACAAAACGAAAAAACTGTGAGAAATTCTTAATTTAAAGATTCATTCATTCATTTTCCTTCGGCTTAGTCCCTTATTTAGCAGGGGTCTCCACTGCGGAATGAACCACCACCTATTCCAGCACACATACAAAAGTGTGTGATTTGAAATCAATGGTGCTTTAAAAACTCCTTATATCTGCTGTTCGTGAAATAGTGGGAACCCTGATGTTTACTCTGCTCCTTCTCCAG
Seq C2 exon
TCCAGAGACCCTCACCTGGCCATATTCTGCGACCTCATGGGCGTCAGCACGGAAAACATGAGCCGCTGGTTGTGTCATAGACGGATAGTCCTGTCAACAGAGACCGTAGTCAAACCGCAGCCCCGGGAACGTGCTGTCAATGCACGCGACGCTCTTGCTAAACACATCTACGCCCATCTTTTCAACTGGGTCATTCACAAAATCAACCACGCGCTGATGGTCCCTGGCAAACAGCATTCGTTTATTGGGGTCTTGGATATTTACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104235:ENSDART00000170640:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):

C1:
PF0006316=Myosin_head=FE(5.2=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(13.1=100)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]