MmuINT0104507 @ mm10
Intron Retention
Gene
ENSMUSG00000033590 | Myo5c
Description
myosin VC [Source:MGI Symbol;Acc:MGI:2442485]
Coordinates
chr9:75255831-75258224:+
Coord C1 exon
chr9:75255831-75255937
Coord A exon
chr9:75255938-75257958
Coord C2 exon
chr9:75257959-75258224
Length
2021 bp
Sequences
Splice sites
5' ss Seq
AGTGTAAGA
5' ss Score
4.57
3' ss Seq
CTTGTGTTTGTTTCTTGAAGGAG
3' ss Score
7.33
Exon sequences
Seq C1 exon
GATTCAAGAAAGATTTTCAAATGGATGTTTTTAAGATCCTAGCTGCCATCCTGCACCTGGGCAATGTGCAGGTCACCACGGTGGGCAACGAGAGGTCTTCAGTCAGT
Seq A exon
GTAAGATTCATGTTCGCTTTGCGCTTCCTGGGTGTGAAGGTCAGTGGGGCACAGCTCATGGCTCACTGGCCACCACGGTTGAGACCAGCCATGCTTGGACCTGCTAGACAGACTGGTTTAGCAGGAACGAGGAAGAAAGCTTTCCAGGGGTTGTCTTATTCCCTTGTCACAGTACATGTGTGCCATGAGTGTGTGTGTGCATGAGTGTGTGCATGAGTGTGTGTGTGTGTGCGTGTGCGCGCGCGTATGTGCACACACGTGTGTGTTGGGGGCTCTGCTATATGTTCTTTTATTCAACAACATCTATGGAGCCTATCATGTGCCAGGGATAGCTGTAAGCTCTGTGAAACATCATCAGACCAAACAGGAAGTCCTGACCTCACAGGAGGTGGGGTCTGGAGAAAGTAGGAAGTTTACCTACCATAGGCTGAGGGTAGGCAGTGGGTCTCACTCCTCTCCACAGCTCTCCTGCTCTCCAGGGTACCAGGTGGGCTGGGGTCTACTTCTTGCCCTCCTCCAACTCAAAACTGCCCCTCCCTCCACCCGTGTCCAGGCCTTGCAGACTTTGCCGGTCCTCAGATGACTGGGATATTGGGAGAGCTGAGTATAATGTGATTGCAGCTCTGATCTTTTCCTGCCAAACTCTCATAGAGTGAACATGGTTCCCACCCAGCCACCCTGAGCACTGTTGCACCAGGGTTGCCATTGCAGCAGAATCTTAGAAAGGAAAGAATTCTAAGACTCTCTTTTTTAATTATTAAATTTTATTTTATGTGCATGAGTGCTTTGTCTATGTATATACCTGTGCACCCCTTGCATGCCTGCTGACCAGGAGGCCGGTAGAGAGTGTCAGAGCCCCTGGAACTGGAATTACAGGAGTGGTGGGCTGCTTTGTGGGCCCTGATCCTCAGATCTCCATTCCCCCCCCCCCCCGAAGAGCAGCCAGTGCTCTTAACTGCTGAGTCCTTCTCTCCACCCCAGCTAAGACTTTAGAAAAAATGGAGCCCTATAATTATTGACCCTGGCTTTGGTAAGGCATACAATTCATTTATTTCGGGAGCTTAGAATGTCAGACAAACTGAATTTCAGGTGAAGCACTCCTCTTAAAAGTCCACTGGCTGCCGCTTCTTTGTATCCCCGTCCTAGCATAGAAGCCCCTCCAACTCAATCTTTTTACTTTAGGTGTTTTCGTCCTTTCTTAGACAGAAAGGCTCTGCCAATCCCTTCCCCAGAGAGGGTGTCAGGCGGGGCCAGAAGGAAGGGCTGTGCCCGTTGTGGCAGCAGCAGGAAGGGTGAGGGGAAGAGCAAGGAGGAGGTGGGGCCGCATGGGGGGTTACATTTTTTCCCTCCACTTTCTGAGCATTTAAAGAGCAGTCACTTGTGATAGATACCTCCTGTCTTGGGAGGAAGGATGGTGCGAAGTCACATGGAACCACGCTCCCCAGCCAAGTGGCAAGAGCGGGAGGCAGTGCATGCTGGCTAAGGCAAACAGCATCCCCTACCCCTACCTCTGCAGACCAGTGTGGCATCTCTCATGTACAGACTCAAGAAGAGAAACGTCATTTTGTATATTCAGGAGACTCCTCCATCAGCTCTGATGTCAGCTGAGAAGTTAGCTCAGGCTAGGAACTCCTCCCAGGTCTGTCTGGTAACAATCCTTTCCTTAGATGGATCACCTAAGGGAATCATGGCCACATTAGTTGGCCACAGGGTTGGTGTACAATATGCTGACAGCATATGGCTGGAGAAGTCAAAGAAGTGTGGAGGAGGGGGTGCGGTTGTATGGATGGATTGGAGCAGGCCTGCTGGCTTCTACAGCCAGAGTGAAGAGACTCAAAAAGACACAGCCAGGCCTCTAGGCATCACTGCAGCAGGGAGGGTGTCACCACAGCCTCCTGCTCTACTCCAGCCTTAGTTCCAATCACAAGGCCTGAATATCTCACACAGTCTTGGACAGACTTGGCCAGATGGGGCGGTATTAACTTTGGATGCCTGATGGGGCTTGTGTTTGTTTCTTGAAG
Seq C2 exon
GAGGATGACAGTCACCTGAAGGTGTTCTGTGAGCTCTTGGGCCTGGAGACCAGCAAAGTGGCTCAGTGGCTGTGCAACAGAAAAATTGTGACCTCCTCGGAAACTGTGGTAAAGCCCATGACCAGGCCTCAGGCCATCAACGCCAGGGATGCGCTGGCCAAAAAGATCTACGCTCACCTGTTCGACTTCATTGTCGAGCAAATCAACCAGGCGTTGCACTTCTCAGGCAAGCAGCACACTTTTATTGGTGTTTTGGACATTTATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033590:ENSMUST00000036555:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.2=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(13.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types