RnoINT0097331 @ rn6
Intron Retention
Gene
ENSRNOG00000008356 | Myo5c
Description
myosin VC [Source:RGD Symbol;Acc:1309994]
Coordinates
chr8:82196765-82199297:+
Coord C1 exon
chr8:82196765-82196871
Coord A exon
chr8:82196872-82199031
Coord C2 exon
chr8:82199032-82199297
Length
2160 bp
Sequences
Splice sites
5' ss Seq
AGTGTAAGA
5' ss Score
4.57
3' ss Seq
TTGTGTTTGTTTTTTTACAGGAG
3' ss Score
10.64
Exon sequences
Seq C1 exon
GATTCAAGAAAGATTTTCAGATGGATGTTTTTAAGATCCTAGCTGCCATCCTGCATCTGGGCAATGTGCAGGTCACCACAGTGGGCAACGAGAGGTCTGCAGTCAGT
Seq A exon
GTAAGATTCATGTTCACTTTGCCCTTCCTTTGGGTGTGAAGGTCAGGGGGGCACAGCTCATGGCTCACTGGCTACCATGGATGAGAACAGCCATGGTTGGACCTGCTAGACAGACTGGTTTAGCAGGAACGAGGAAGAAAGCTTTCCGGGGTTGTCTTATTTGTCACAGGGCATATGTGCCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGGGGGGGGGAGTGTTGTAGAGGGGTGCTATGTGTTCTTTTATTCAGCAACATCTATGGAGCCTATGTGTCCCAGGGCTTGTTGTAAGCTCTGTGAAACACCATCAGACCAAACAGGAAGTCCTGACCTCACGGGAAGTGTGATCTGGAGAAAGTAGGAAAGCCTACCTACCATAGACTGAGGGTAGGCAGTGGGTCTCGCTCCTCTCCCCAGCTCTCCTGCTCACCTCGTAAGGTGTCTGGGGTGTACTTTTTGCCCTCCTCCAACTCAGAACTGGCCCTCCCTCCACCAGTGTGCAGGCCTTGCAGAGTTTGCCAATCCTCTGATGACTGGGATACTGAGAGAGCAGAGAATAATGTGGTTGTGGCTCTGACCTTTTCCTGCCAAACTCCCATAGAGTAAACATGGTTCCCACCCAACAAGCACAGCCACCGAGAGCACTACTGCACCAAGTTTGCCACTGGGCCAAGAGCTTAGAAAGGAAAGAATTCTAACACTTTTTGTTAAGTCATTTAATTTTATTTATGTGCATGCGTGCTTTGCCTGCATGCATGTCTGTGCCCCCTTGCATGCCTGCTCCCTGGGAGGCCAGTAGAGAGTGTCCGATCCCCTGGAACTGGAAGTACAGGCAGTGGTGAGCTGCTACGTGGGTCGTGACATTCAGACCTCGGTTCTCCCAAAGAGCAGCCAGCGCTGTTAACTGCTGAGCCTTCTCTCCGGCCCCAGCTAAGACTTTAGAAAAAAAGAGCCCTCTGATTATTGACCCTGGCTTTGGTACGGCATACAATTCATCTATTTCAGGAGCTTAGAATGTCAGACAAACTGAATTCGGGTGAAGCTTTCCTCTTAAAAGTCCACTGCCTGCTGCCCCTGTGAATCCCTTTCCTAGGTGACAGCTCCTCCCACTGAATCTCTTTACTTCAGGGATTTGGTCCTTTCTTAGACAGAAAGGCTCTGCCAAGTCCTTCCCCAGAGAGAAGTTCAGGTAGGGTCAGAAGGAAGTTCTGTGCTGGTGTGGCAGCAGCAAGAAAGATGAGGGGCAGGGGCTAGAGAGATAGCTCAGTGGTTAAGAGCACTGATTGCTCTTCCAGAGGTCCTGAGTTCAAATCCCAGTGGCCACATGGTGGCTCACAACCACCTGTAATGAGATCTGACGCCCTCTTCCAATGTGTCTGAAGACGGTGTACTTATAAATAATAAATAAGTAAATTTTTTTTTTAAAAAAAGGGGTGAGGTGAAGAGCAAGGAGAAGGCAGGGCCACTTGGAGTTTAAATTTTTTTCCTCCATTTTCTGAGCATTTAAAGAGCAGTCACTGTGTGATGCTGCCTACCTCAGGAGGAAGGATGGTGTGTGGTCACATGGAATCACGCTCCCTGGCCAAGAGACAAGAGCTGGAGGCAGTACATGCTGGCTAAGGCAATTAGCACCCCGAACCCCTTGTCTGCAGGCCAGCGGGGCACCTCTCATGTTCAGACTCAAGAAGAGAAAAGTCCCCCATTAGCTCCGGTGCTGAGACACTAGCTCAGGCTAGGAGCTCCTCCCAGATCTGTGGTAACAATACTTTGCAGGGCAGAGAGATCCCTTAAGACAGATCCTAGTCGCACCTGGTCCGTGTCCAATCCTCTGCTGACAGCGTGTGTCTGGAGAAGTCACAGAGGTGCAGAGGAGGGGGCACAGTTGTGTGTATGGGTGGAGCAGGCCCACAAGCTTCCACAGCCAGAATGAAGAGACCCAGAAAGACACAGCCAGGGTCGCTAGGCATCACCACAGCAGGGAGAGTGTCACCACAGCCTCCTGCTCTACCCCAGGCTTAGTTTCAACCACGAGGCCTGACTGTCTCACATAGCTACTCTTTCCTTGGACAGCTTTGGCCAGATGGGGCAGTATTAACTTTGGATGTGTGGTGACCCCGATGAGACTTGTGTTTGTTTTTTTACAG
Seq C2 exon
GAGGATGACAGTCACCTGAAGGTGTTCTGTGAGCTCTTGGGCCTGGAGACTATCAAAGTGGCTCAGTGGCTATGCAACCGAAAAATAGTGACCTCCTCAGAAACTGTGGTGAAGCCCATGACCAGGCCTCAGGCCATCAATGCCAGGGACGCGCTGGCCAAAAAGATCTACGCTCACCTGTTCGACTTCATTGTAGAGCAAATCAATCAGGCATTGCACTTCTCAGGCAAGCAGCACACTTTTATTGGTGTTTTGGACATTTATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008356:ENSRNOT00000011768:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.2=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(13.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]