BtaINT0098265 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003955 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr15:57353655-57356410:+
Coord C1 exon
chr15:57353655-57353790
Coord A exon
chr15:57353791-57356303
Coord C2 exon
chr15:57356304-57356410
Length
2513 bp
Sequences
Splice sites
5' ss Seq
AAGGTATAG
5' ss Score
7.98
3' ss Seq
CACTCTGTGGTGCTGCCCAGGCT
3' ss Score
4.8
Exon sequences
Seq C1 exon
GGCACGGACACCACCATGTTGCATAAGCTCAACTCCCAGCACAAGCTCAACTCGAACTACATTCCCCCCAAGAACAATTACGAGACCCAGTTTGGGATCAACCACTTTGCAGGCATCGTTTACTATGAGAGTCAAG
Seq A exon
GTATAGGAGGGCCCCCTGGGGCTGGCTGTCTCTCTTTGCCTGTGTTCCCTCCCTTCCTTCCCCTTCTCCAGCCCAGGACAGACACACCAGAGTGCTGAAATACAAGAGGGAAGGGATGTTAGGAAACATTGGGTTCAGTGCTTTTTTTTTTTTAAGAGTTTACAAAATTTTGGTAAAATATATGTAATATAAAATTAACCATTTTAACAATTTTTAGGTTTACAATTCAGTAGCATTAACTACATTCACGATATTGTGCAACTGTCACCACTCTCCAGAGTCTATCCATCACCCCAAATAGGGGCTCTGTATGCACAAAACATAACTCTGCATCCTCCCCTCACCCCCTAGTCCCTGATCACCTCTACTCTACTTTCTGTCTCTATGTATCTAACTATTCAAGTACCTCATATAAGCGAAACATACAGTATTCATCCTTTTGTTGTCTAGCTTATTTCACTTAGCATAATACCCTCAAGGTTCATCCATGTTGTAGCATGTGTCAGAATTTTGTCCTTTTTATGACAATAATATTCTATTGCATACACACACACACACACACAGAGCACGGTTTATTTATCCATTCATCTGTTGATGGACAGTTGGATTGTTTCCACCTTTTGGCTGCTATTGATAGCGCTGCTGTGAACATGGGCATTGTTGTTCAGTCACTAAGGTGTGTCCAGCTCTTTCGACCCCATGAACTACAGCATGCCAGGCTTCACCATCCTCCACTATCTCCCAGAGTTTGCTCAGATTCATATCCATTGAGTCAGTGATGCCATCCAACCATCTCATCCTCTGCTGTCCTCTTCTCCTTTTGCCTTCAATCTTCCCCTGCATCAGAGTCTTTTCCAGTGAGTCGACTCTTCGCATCAGGTGGCCAAAGTATTGGTGATTCAGCTTCAACATCAGTCCTTCCAGTGAATATTCAGGGTTGATATCCTTTAGGATGGACTGGGTTGATCTCCTTGCAGTCCAGAGGACTCTCAAGAGTCTTCTCCAGCACCATAATTCAAAAGCATCAATTCTTTGGTGCTCAGCCTTCTTTATGCTGTAATTAGGGCCCTACAATTCCATCCTAGCTTCAGAGCCCCATCTCCGGTACTGGGTGCCTCCTACAGCTCACCCGTCCCCAGATGTCAGGTGGGCAGCCCCACACTGGGTCTCTGTCTGTCCACCAGCCAGGGCAGTCTGGGTCCTGGGGGAAAGGGTGCTGCTTCTCTGCAGAGTTCCTCCTCCTCAGGCACCCCATCTTCTGCCCCACCCTATCAAGGACCCCATCAACCAGCTCCTCAATCCTCAGGCCTGGGAATGGCAGCCCTCTTTGGAGTCTGTGTGGTGCAGGGAGCCTCCCTGGACTGGTGCCTGGGCTCCTAGACTCAAGTCTTAACTCTGCCCGCAGTTTGCTGTGGGTGTTAGACAGTTTGCTTAGCTTCTCTGAACACTGATTTCTTTCCTTGTCTGGGTTGGGGAAGATAATCTCCACCTGTCCCACATATACAGGGTAAGTTGTGAGCATTACAGCTGTGAGGGCAATATCCAAAATCAAGGTACTTTTACTTTTGTTCCTTTACTATTAGCTGGTACCAGACGAACTTGCATTCTCTCCTAGGGGACCCACTTAAGGAAGGTTTTTGACACCTTTGTTACCAACCTGGGTCCTTGGACTCTTTAATCCATAGAAGTTGATAAAAGCCAAGCAAGAAGTTCAGGCAAGGCTTTACTGAGGCTTGTGCTGCAGCATGAGGGAGTGAGGGAGCTCGAACAAGAAACAGGTCCCCTTGCTGGCTCCCTGAGTGGGGGGAGACTGGTTCCTTAAATGAGGTGAGGGTGGGGGCGGATTGGTGAGGTGGGTCAGGCTGGAGGGGTGGCTGGCGTGGCCTGCTCACACTCTTGGTGCTGTGTGCAGGGCTCCAAGGCAATGTCCTGCTTTTGCTCCCAGCAGAAGCAGAAATGGTAGTTGGTTTGTAGCCTTTTTGTATTTTACTGTTCATAACTGTCCAAGCTGTACATGCGCTGCAGTTATTTTTAGTCTCATAGCTTCTTTGTTTCTGTTGCTCACGGAGAGGTTTGTCCAGGTGCAAGCACTCCAGTAAAGGATCCCACGCCCCAGCATAGGGTCCAACGCCCCAGCCTATCTCATGTTTGTTCAGAAGACTAAAGCTAGCATTTCAGGCATTGGGGTGGTTCAGTGGGAAAGGTAGCCCCACTCCCTCCCGGGGACTGAGACATCCTGCCCTTCCCTTTGTCCAGGCCTGGAAGAGAGGGGCAGTGTGTGGCTGCGGAGACTGAGTTCTAGCTCTGGCTCTGCCCCTTGCTTTCTCTGTGACCTTGGGCAAGCCACTGTCCTCTCTCGGCCCCAGAGTCCCCCACTGTAAAGTGGATGTGGTTGAACTAGGGGGATTTTGAGGGTCTTTGTGGACGAGGCATGGTGGCTTTGGGAAGGGGGTGTCTTGTTGGGGGGAGGCTGCTGGAGTTGCAATGTGTGACCACTCTGTGGTGCTGCCCAG
Seq C2 exon
GCTTCCTGGAGAAGAACCGGGACACTCTGCATGGAGACATCATCCAGCTGGTGCACTCCTCCAGGAACAAGTTCATCAAGCAGATCTTCCAGGCCGATGTTGCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003955:ENSBTAT00000005191:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.087 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.8=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development