DreINT0101022 @ danRer10
Intron Retention
Gene
ENSDARG00000099871 | myo7aa
Description
myosin VIIAa [Source:ZFIN;Acc:ZDB-GENE-020709-1]
Coordinates
chr18:3127740-3128790:+
Coord C1 exon
chr18:3127740-3127875
Coord A exon
chr18:3127876-3128683
Coord C2 exon
chr18:3128684-3128790
Length
808 bp
Sequences
Splice sites
5' ss Seq
GAGGTCGGT
5' ss Score
5.44
3' ss Seq
TAATGTGAATGTGTGTGCAGGTT
3' ss Score
5.64
Exon sequences
Seq C1 exon
GGCACAGACACCACCATGCTGAACAAACTCAACTCTCAACACAAGCTCAACACAAACTACATCCCACCCAAAAACACCTATGAAACACAGTTCGGCATCCAGCACTTTGCTGGAGTGGTGTACTACGAGACCAGAG
Seq A exon
GTCGGTGTACTTCATGCAGTGCACTGTATTCAAATACATTTAATATTTTTTGATAGATAGATAGACAGGCAGATGGAAAGACAACAGGACGGATAGATAGACAGACAGACAGACAGATAGGTAGGTAGGTGTACAGACAGATAGCGAGACAGATAGACAGACAGACAGACTGACAGATAGATAGAGAGACAGACAGATAGATCGATAGACAGACAGATAGAGAGATGAACAGATAAACAGTAAGACAGATAGATCGATAGACAGATAGCGAGACAGACAGACAGACAGATAGAGAGACAGACAGACAGACAGACAGACAGACAGACTGACAGACAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAAAGACAGACACACAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGACACACAGATAGATAGACACACAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATATTTTAAAATGTATTAGTATAGTATTAGTATGTTGATGTAAAGATTTAATGTGAATGTGTGTGCAG
Seq C2 exon
GTTTTCTGGAGAAGAATCGAGACACTCTGCATGGTGACATCATTCAGCTCGTTCACTCCTCCAAAAACAAGTTCATCAAGCAGATCTTTCAGGCGGATGTCGCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099871:ENSDART00000166980:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.082 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.8=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCACAGACACCACCATGC
R:
CGACATCCGCCTGAAAGATCT
Band lengths:
238-1046
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]