MmuINT0104545 @ mm9
Intron Retention
Gene
ENSMUSG00000030761 | Myo7a
Description
myosin VIIA [Source:MGI Symbol;Acc:MGI:104510]
Coordinates
chr7:105239532-105240386:-
Coord C1 exon
chr7:105240251-105240386
Coord A exon
chr7:105239639-105240250
Coord C2 exon
chr7:105239532-105239638
Length
612 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAA
5' ss Score
6.82
3' ss Seq
CTGCTCTTTACTGCTACCAGGCT
3' ss Score
5.06
Exon sequences
Seq C1 exon
GGCACGGATGCCACCATGCTGCATAAGCTGAACTCACAGCACAAGCTCAATGCCAACTACGTGCCACCCAAGAACAGCCACGAGACCCAGTTTGGAATCAACCACTTTGCGGGTGTTGTCTATTATGAGAGTCAAG
Seq A exon
GTACAAGCGGTGATGGGTGTCTGTCTCTGTACTCCAAGCCCTCTCTGTCTCTAGGTTAGGAGTGAGCCCACAAGGTGCAGAGTTCAGAAGGGACATGCCATCAAGTGCTTTACCTTTTACTTGATTTTTGTCTTAAAAACAAAAGCAAAACCAACCAACCAACCAAAACCAGACAAGGTCTCACTGTGTAGCCCTAGCTGGGCGGGGACTCACTGTGTAGAGCAGGCTGGCCCGGAACTCATGGAGGTCACCTGCCCTGGCCTCCTGAATTCTGGGCTTGCTTTTGCTTTCTTATGATACTGGGGATAAAGCTGTGCTGTACAAGTGCTCCACCCCTGAGTTATTTCCCCAGCCCTTCAAAAGATGGTTTTAAAAAGGACACATGTAATTGTGGCAAAGCATATGTGATACAAAGTTTACTATTGTAACTACTTTACATTCAATTCAGTGGCCTTATGGGCATTTACAATGCTGTGAGTCTTTACCACCACCCCTCCCAGGGCTTTCCAAGACTTTACACAGAAGTCAGTCCACTCAGATGTTGTGGGTTTGGGGAGCCCTTGCCCAGTGGTGAGGGGGAGGGGAGCTATGACTGCTCTTTACTGCTACCAG
Seq C2 exon
GCTTCCTGGAGAAGAACCGAGACACCCTGCATGGGGACATCATCCAGCTGGTCCACTCTTCCCGGAACAAGTTCATAAAGCAGATTTTCCAAGCTGACGTTGCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030761-Myo7a:NM_008663:14
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.152 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.8=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGCCACCATGCTGCATAA
R:
CATGGCAACGTCAGCTTGGAA
Band lengths:
238-850
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: