GgaINT0104518 @ galGal3
Intron Retention
Gene
ENSGALG00000000733 | MYO7A
Description
NA
Coordinates
chr1:198144718-198145589:-
Coord C1 exon
chr1:198145454-198145589
Coord A exon
chr1:198144825-198145453
Coord C2 exon
chr1:198144718-198144824
Length
629 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
GTTGTCCCATTATCCTTCAGGTT
3' ss Score
10.73
Exon sequences
Seq C1 exon
GGTACAGATGCCACGATGTTACACAAGCTGAACTCCCAGCACAAGCTGAACACCAACTACATTCCTCCAAAGAATAACTATGAAACCCAGTTTGGCATTAATCATTTTGCTGGAATTGTTTACTACGAAACAAAAG
Seq A exon
GTATGGGATGGCCCTTGGGGCACTGCAGGTGTTAGGGAATGCTCAGGGGGAGGTGAGATGTTGCTGCAATGAAGCAGGGTTGGATTGCAGTCAGTACTAGTTGTCAGTGTTCTCCTTTTCTGGCGGCAATGATCTTTCAGCAGTGTCCATGATCTGCAGAGCTTTGAGCTCTTTCATTTCTGTGTCCCCAGGAGTGAATTGCAGTGCTTTTCATCACTACTGTTTTTGATCTGGTCTCAGGATGTGTCTCTGTCTTCATCCTTTCTGCCCACTCCACCATTCTTGCTTAGTCTTTCCTAATGAAATCCACTCAGGTCCATCCCAAGCCATGGCTCTGTCAGGACATTTAATTGTTCTGGGCTCTGGGATAATGTTGTGTACCTGCGTTGAATTTTTCACACAAGAGCTCTGCAAGTTCTGTTTCATTGCACAGCACAGCGTGTCCTTAACCCTTAAGCAACTCCAGACAAATGAAGAGCACATTTTCAATGCAGTTCCTTGCTTTTGTGCACCTCTCATTATCTCCAAAGGGAAGCCAGTAGCCCAGCAACCCAGAGGCTGTATGCAGGCCACCTATTGGCCATGTCACCTTATGTCATCAACCTGTGTGTTGTCCCATTATCCTTCAG
Seq C2 exon
GTTTCTTGGAGAAAAACAGGGACACGCTGCATGGAGACATCATTCAGCTGGTGCATTCATCAAAAAACAAATTCATCAAACAGATTTTCCAAGCAGATGTGGCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000733:ENSGALT00000001046:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.8=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGATGCCACGATGTTACACA
R:
CATAGCCACATCTGCTTGGAA
Band lengths:
240-869
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]