BtaINT0098312 @ bosTau6
Intron Retention
Gene
ENSBTAG00000039803 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr2:4869761-4874264:-
Coord C1 exon
chr2:4874129-4874264
Coord A exon
chr2:4869865-4874128
Coord C2 exon
chr2:4869761-4869864
Length
4264 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
GGGGCTCTGCTTCCCCACAGGCT
3' ss Score
9.4
Exon sequences
Seq C1 exon
GGGACAGATACCACCTTGCTGCAAAAACTGAAGAGTGTCCACGCTAACAACAAAGGCTTCCTGCAGCCCAAGAACATCCACGATGCCCAATTTGGCATTGCCCACTTTGCTGGCGAGGTGCACTACCATGTAGAAG
Seq A exon
GTAGGTGAAGCTCCTCTCCACAGTCCCTTCCTTCCAAATCTGGAGCACCCCAGGGAGGCCATGGAAAGAAGGCTAGGTCATTTTGCAGAGCCAGCAATGGGAGAGAGGGAATGGAATGGACCAGGAATGTATGTTTGTGTTTTGTTTTGTTGGTAATAGTTCTACTGAGAGATAATTCACATCCATAGAATTCACTCATTTGAAGTCTACAACTCAATGGTTTTTTAGTATATTCATAGACTTACGTAGCTGTTGCCACAATTTTAGAACATTTACATCACCCCTCAAAAGAAATCCCCACTAGGGACTTCCCTGGCAGTCCAAAGGTTAAGACTCCATTCTTGCGTTCAGAAAAACAAAAGGAACTCCCATTAGCAGTCTTTCTTCATTGCTTCCTAATTCTCCCCAACCCCAGCAACTGCTAACTTCGGTCTCTGTGGATTTGCCTGTTCTGGACATTTCACATAAACAGAATCGTGCATCGTGCGGCCTTTGTGACTGGCTTCTTTCACTTGGCATGGCGTTTTCAAGGTTCATTCACACTGTAGCGTGTTTCTGTACTGGTTCTTCACACTGCATACAACGGTCTGCAGCACAGATATGCCACTTTCTGTTTATCCCTTCATCAACTGATGGATGTTTTTGGCCATTATGAGTAACGCTGCTATTAACACTCATGTACAAGTTTTTATGTGGACATACGTTTTCACTTCCTTGGGACACATACCTAAGAGAGGAATTGCTGGGTCATGTGGTATTTCTATTTAACTTTTGGGATAAGCACCAAACTGTTTTTCAAAGTGGCCGCACCATTTTACATTCCCATTAGCAATGTATGCAGTTTCCAATTCCTACAGCTCCTTACCAACACATGTTAATTGTTTTCTTTTTTATTGTAATTACCTCATCAGATATAGAATTTGCAAATATTTTCTCCTCTTCTTTGGGATATCTTTTCACTCTCTTGGTAGTGAAAGTGTATATGTGGAGATAAGGTCAGGCATGTTTTTAAAGATTTTATTTATCTATTGGCAGTGCTGGGTCTTCATTGCTGCACGTGGGCTTTCTCTGGCTGTGGCAAGCAGGGGGTCCTCTCTAGTTGCAGTGTGGTGTGAGGGCTTCTCAGTGTGGGGGCTTCTCTTGTTGCGGAGCACAGGCTCTAGGGAGCAAGGGCTTCAGTAGCTGCGGCACTAGGGCTCAGTAGCTGTGGCCTGTGGGCCCTAGAGCTCACAAGCCCCGGTAGTTGTGGTGCTTGGGTTTAATTGCCCCATAGCGTTTGGGATCTCCCTGGACCCTGGATATAACCCATGTCTCCTGCATTGACAGGTGGATTCTTAACCACTTGACCACCAGGGAAGTCCCAAGCCTAGTTTTGATTAGAGAAATAAGGGGCTGAGGTGGTCAAGCTGCTGGTGTGCTTAGAAAAATGGGAGAGGTGGCCAGTGGGTGCTGTGATCAGGAAAATGAGGCGGGAAGCCAGAGGGTGACTCTGTGTGGCTTGTAAGGAGAACTGAGGGGCTACTGTGGTCTAACTGGAAACTTGGAGTCAGGGATGCTCCAAGTACACTTTTCAGGTGGAGGGACAAGGCAGCAGGAGGGGCTGCTGTTTTCACATGGAGGAAGGGAGGTGTTCCGAGACCAGGGGATTATTTCTGTTGGAGAAATGAGGAGGTAAGGGGGGTGCTCCTTTATAACTCCCACCAGATCCTGGCTTTGGGGCTTTTCCAAAAGGGGGAGCCCAGAGCTAGTGGGACTTCGGAATTCCAGAACACAGAGACACTGAGCACATCAACCTCCGTGGGCTACTCAAGGCCAAGTTTTAGTTTTTGAAGTGAACTGCAACTTCCATGTATGCTAAGAGTAAGGTCGCTTCTTTCTAGGCTTTCGGAGCACAGAATTCCATTAATGCTCCTGGAAACTGAGCCTGCTGGGTGTTTTTCAGTGCTCTGCTATCTTCATGACCTAAGCCCATTACTCTGTCTTTTGGCGGGGATGGGGTGGGGGGAGGTTTGGGCCCAGGTGTGCCTCAATCATCCCCCCAAAAGCACCTGGGGCTGGGAGGCTCTGTCTAAGCCTGGAAGGGCACAGGGTAACATCACGTGCCTGCTCGCCCCGTCTGCAGAAGGCTGTCTTCCAGCATAGGGCTGAGAGAGGGGCTTATGTGCCAGCCTCCTCTTCAGGTGGCCCTGGAGCCTGGGAAAGCAAGCTTGTTGTCACCACACTCAGCTTGGTGAGGGCAGCTCGGTTTGAGCTCTTGGTCCAGTGTTCCCCTCTCATAGCACCTGCTGGCAGAGAGGGAATCAAGCTTCCTCTTCCACCATTGACATGGCCTTCCCAGACCCTACACGAGGCTGTGCAGGCATGCACAGAGCACCCCACTAAAAAGGGGTGACTTAAAGGGAGAAGACAAGTTGGAGTCAGGCGCTTGTGGGGTGCAGCCTTCAGCAGGCCCCCAGTCATCGTCTGGCCTGGTTTTGAGAAGCAACCGTCCTCTGGCGCCTTCTTCTTGCCGTTCCATGCCCTGCCTCAGACAGGTCCACTCTCTCCCACGGCGGGAGGGAAGATGGGCTGTCCACTCATCCCCAGACGCACGCTGTGTCCCCTGGCCAACACTCCCATAGCAACGTTCCACAAATAGATACAGGGATGCATTTTCTCACGGTCCCAGAGGCCAGGAGTCCAAGACAAACGTCAGCAGGACTGGAGCCTTCTGAAGTCTCTCCCTGGCGTCTCTCTTGTTCCCATGCGTGTCTGTGTCCTAATCTCCTCTTCTTGTAGCACACCACTCTGACTGGGTTAAGGCCCACCCTAACAGCCTTATTTTACCTCCCTGACCTCTTCAAAGGCCCTCTCTCCACACACATTCTGAGGTACTACGGATTAGAGCTTCAGCATATGGATTTGGGGGGCAAACAGCTCAGCCCATACACAGCCCCCTCCCTAATTTCTAGAGTCTCACTCCTTAAGCTGGAGGGCCCTCCGACTCTAGCATGTTGCTAGAGAAGGGCCTTGGGGCACCCAGGCCCTCAGGGTCTCCTTAGTGAGCGGCAGACATGCTTCATTCCCAAACCTACTGGGTCCAGGCCCACGCATGTGCCTGCACATGTGCATTCACGCAAGTGCTCGCGTGTATGTGCACACACTGCCTGTGGGCACACGTTCAGTTCCAAGACCAATGCAGTTTATACTTATAATGAGGAAAGAAATACATTTTAGGACCTCATAATCAGCAAGTCACCTACCCCTGCCCCCTATCCTTGAAGCCAGGAAGCCAAGTCATGTTTAATTTCTTTCCTTTCCCCATTTTGGGCTTCCAGGAAGAGCAAAGCAGCGATTTCTCCCCCTTGCTGGTTCCACAGGGACATGTGAAGCAGCTGCTCCTTTTCAGACAGGCTGCTGGGGAAGGGTGGGCCTCCCAGCAGGAGTGTCCAGATTGCAAGCTCCCTGGACGCAACCAGGTTGCCAGATTTTCGGAAGTTACGGGGCTGGGCAGCCTTCTTCGCTTTCTCCTTTTCCTTCTCTTCTGTTTTGCTCCCTTATGTAGACAAGCGGTTGGCTCAATCAGATTTGCCCAGGGTTCCCCAGAAATTCAGAGCCCTGACGAGAATCCACAGTCTCCACCCTCGGGAGGTCCAAACCGCACAATGATTGCACAGTCCGTCTGCTGTGCTGCTAGTGGGCTCCTAGGTGGACGCGGGAGTGACGGTGGGGGCTGGGAGGGCCAGGATGTTGAGGGGAAGGGGCTCGGTCCCACCCGTGGTCCACCCGGGGAGCTGCGGCTGATGGAACAGATGGGAAGGCCTCAGGCTTCCCTGAGCTGAATGACAGGGCCCAGGTGAAGGGCCACACGGCGCAGGTGGGAGCCACGTGTGGGTCAGTAGGGCCTCCCGGAATAGATGATGCTCGAGCTGTCCTTGAAGCACAAGCCAGCATTATCCTGGAGGGCTTAGAAGGGAAGAACGCCCCAGAGATCTCTTGGGGGCCATAGGCCATCAGGAGAGGGGAGACCCGTGGGGTGGGGCACAGGTACTAGGGGAGAGGAGACCCCCGGGGTGGGGTGCAAGCTTGGATGAGGGAGTTTGGGGTGGGGATGGTGGGTTGTGGGGGCTGCAGGGTGTGGATGTGACATGACTTGGTGCTGAGCGGAGGCACTGGATGCCAAGACGTGGGGAGATGGAGGTGGGCATGGTGGCCTTCTGCCTGCGCCTCACCCTCCCCTCCCCGGTCTGAGCTGGCGGGGGCTGGGGGCTCTGCTTCCCCACAG
Seq C2 exon
GCTTCCTGGAGAAGAATCGGGATGTGCTGAACAGGGACATCCTCGCCCTGGTCCACTCCTCCCAAAACAAGTTCCTGCGGGAGATATTTGGGCTGGAGTCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039803:ENSBTAT00000061382:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.8=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]