GgaINT0031401 @ galGal3
Intron Retention
Gene
ENSGALG00000001936 | MYO7B
Description
NA
Coordinates
chr9:2280437-2280934:+
Coord C1 exon
chr9:2280437-2280572
Coord A exon
chr9:2280573-2280842
Coord C2 exon
chr9:2280843-2280934
Length
270 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
CTTTTTTTTCCATCCTATAGATT
3' ss Score
10.22
Exon sequences
Seq C1 exon
GGCACAGATGCCACCATGCTTATCAAAATCAATTCCCTCCATGGAAAAAGTAGAGTCTATATCCCACCTAAGAGTGACCATGACACCAAGTTTGGCATTAACCACTTTGCTGGGGCTGTCTTTTATGAATCAAAAG
Seq A exon
GTGAGCCTTTCTTGCCTGGATGGGGAAGGTGAAGAGAAGAGCATCATTTGCCATGGCTATATGGCACTCCAGGGTAGTGTTGATCTGTGATCTCTCAAGATGAGAGTTCAAAACATTCAGGTTTATTTAGCTGAAGTCAGGAGGTCAAGAGGATTACTGTAAACTAATCATCAAGTTACTGTAGATGAAGTGGATTTTAGCTTGGCAGAGTTGCATTAGAGCCAGCAGGCTGCAGAGATGACAAGCTGTTCTTTTTTTTCCATCCTATAG
Seq C2 exon
ATTTCTTGGAGAAAAACAGGGACACACTGAGTGCGAATGTAATGCAAGCGGTTCATTCCTCCAAAAACAAATTCCTGAAGGAGATTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001936:ENSGALT00000002994:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.032
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAGATGCCACCATGCTTA
R:
TGGAAAATCTCCTTCAGGAATTTGT
Band lengths:
226-496
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]