BtaINT0098268 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003955 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr15:57364929-57365615:+
Coord C1 exon
chr15:57364929-57365087
Coord A exon
chr15:57365088-57365522
Coord C2 exon
chr15:57365523-57365615
Length
435 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAC
5' ss Score
7.29
3' ss Seq
CACTTCCGCCCCCAACCCAGGAC
3' ss Score
5.12
Exon sequences
Seq C1 exon
CTGTTCGACCGGCACCTGTGTGTGCGCCAGCTGCGGTACTCGGGCATGATGGAGACCATCCGCATCCGCCGAGCCGGCTACCCCATCCGCTACAGCTTCGTGGAGTTTGTGGAGCGGTACCGAGTGTTGCTGCCTGGCGTGAAGCCGGCCTACAAGCAG
Seq A exon
GTACACAGGCCGAGGGCAGAGGTGGTGGGAGGAAGGGTTCCAGCCCTGGGCTGGGCAAAAGTCCCAGTTTTCTTACTGGAACACTGTGCTGGGCACAACATCAGTTTGGCCACCTCAGGTGTGGCTGGGAAAATTGGGATCAGGCAGTGGAGTGCATCTGAGAGCTTCCATTGCCATGCTTGCCTGGTGTGGACTTCACGCATGTGCTGAGTGGGTCCTGGCTGTAGGCGAGGGTTTTACAATCATCAGATGGAGCTAAGGAGAAGAGTGAGGGTCAGAGAAGGCGGGGCCTGGCTGGAGCCACACAGAGTCAGGGGCAGAACTGGAGCAAGATCTCTGTCCCCCAGCCTTCGGAGGGATACCAGGTGGCCTGTCTCACTGGTGGGACCACCCAAGCTCTTGTGCACCCCACCCCCACTTCCGCCCCCAACCCAG
Seq C2 exon
GACGACCTTCGGGGGACATGTCAGCGCATGGCTGAGGCTGTGCTGGGCACCCATGACGACTGGCAGATTGGCAAAACCAAGATTTTTCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003955:ENSBTAT00000005191:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.8=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCGGCACCTGTGTGTG
R:
CTTCAGAAAAATCTTGGTTTTGCC
Band lengths:
246-681
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development