GgaINT0104521 @ galGal4
Intron Retention
Gene
ENSGALG00000000733 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr1:192385707-192386296:-
Coord C1 exon
chr1:192386138-192386296
Coord A exon
chr1:192385800-192386137
Coord C2 exon
chr1:192385707-192385799
Length
338 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
AACATTTCCACTCCCACCAGGGA
3' ss Score
8.08
Exon sequences
Seq C1 exon
CTGTTTGACCGGGAGCTGTGCGTCCGTCAGCTGAGGTACTCAGGGATGATGGAGACCATTCGGATCCGCCGGGCTGGCTACCCCATCCGCTACACATTTGTGGAGTTTGTGGACCGATACCGGGTGCTCATGCCTGGGGTGAAGCCAGCATACAAGCAG
Seq A exon
GTGAGTGTCTTCTTCCGTTGCCAATAATTGTTCTCTATTGGTCTCTCTGGAGGCGTTCATAGGAGGTGCATCCTCTCCAAAAGGAATCATGCAGCATTTGATTCCCAGATGTGGCAGCAGCGCTCTGGGATTTCCAAGTGGAAGAAGAGTGGTCGTGGGACTGGCAGGGACAGAGAGCTGAGCACCAAGGGGCCTTATTCAGCCATTCTCACTTAAATGTGGTGAGAAGTTAATCAGCTTCTAGAAAGTTTAGACCAGAAAGTTTAGACCAGAAAGGGACAGCGTTGAGCAGTAAGGGTGAAGCTGGTGCTGATAAAGAACATTTCCACTCCCACCAG
Seq C2 exon
GGAGATCTGCGTGGGACATGCCAGCGCATTGCTGAAGCAGTGCTCGGAAAGGATGATGACTGGCAGATTGGCAAGACAAAGATATTCCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000733:ENSGALT00000001046:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.8=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTTTGACCGGGAGCTGTG
R:
GAATATCTTTGTCTTGCCAATCTGCC
Band lengths:
246-584
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]