GgaINT0104521 @ galGal3
Intron Retention
Gene
ENSGALG00000000733 | MYO7A
Description
NA
Coordinates
chr1:198134200-198134789:-
Coord C1 exon
chr1:198134631-198134789
Coord A exon
chr1:198134293-198134630
Coord C2 exon
chr1:198134200-198134292
Length
338 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
AACATTTCCACTCCCACCAGGGA
3' ss Score
8.08
Exon sequences
Seq C1 exon
CTGTTTGACCGGGAGCTGTGCGTCCGTCAGCTGAGGTACTCAGGGATGATGGAGACCATTCGGATCCGCCGGGCTGGCTACCCCATCCGCTACACATTTGTGGAGTTTGTGGACCGATACCGGGTGCTCATGCCTGGGGTGAAGCCAGCATACAAGCAG
Seq A exon
GTGAGTGTCTTCTTCCGTTGCCAATAATTGTTCTCTATTGGTCTCTCTGGAGGCGTTCATAGGAGGTGCATCCTCTCCAAAAGGAATCATGCAGCATTTGATTCCCAGATGTGGCAGCAGCGCTCTGGGATTTCCAAGTGGAAGAAGAGTGGTCGTGGGACTGGCAGGGACAGAGAGCTGAGCACCAAGGGGCCTTATTCAGCCATTCTCACTTAAATGTGGTGAGAAGTTAATCAGCTTCTAGAAAGTTTAGACCAGAAAGTTTAGACCAGAAAGGGACAGCGTTGAGCAGTAAGGGTGAAGCTGGTGCTGATAAAGAACATTTCCACTCCCACCAG
Seq C2 exon
GGAGATCTGCGTGGGACATGCCAGCGCATTGCTGAAGCAGTGCTCGGAAAGGATGATGACTGGCAGATTGGCAAGACAAAGATATTCCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000733:ENSGALT00000001046:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.8=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTTTGACCGGGAGCTGTG
R:
GAATATCTTTGTCTTGCCAATCTGCC
Band lengths:
246-584
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]