BtaINT0098276 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003955 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr15:57376608-57377237:+
Coord C1 exon
chr15:57376608-57376811
Coord A exon
chr15:57376812-57377060
Coord C2 exon
chr15:57377061-57377237
Length
249 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
3' ss Seq
GGCATGGCTCTGCCTCCCAGGCG
3' ss Score
5.57
Exon sequences
Seq C1 exon
GACCTGGAGCGCGGGCGGAGGGAGATGGTAGAAGAGGACCTGGATGCAGCCCTGCCCCTGCCCGACGAAGATGAGGAAGATCTCTCCGAGTATAAATTCGCCAAGTTCGCTGCCACTTACTTCCAGGGCACGACCACGCACACCTACACCCGGCGGCCACTCAAGCAGCCACTGCTGTACCACGATGATGAGGGTGATCAGCTG
Seq A exon
GTGAGGACTGGGCGGCATGGGTGCGGAGGGGCAGGGGCCCTGGTGTGCAGGGACCAGGGCTGACTTCACCCGGTGCCCAGCTTGGGGCGGGTCACAGGGCAAGGCCCGGAGAGCAAGCGGCACTCAGCTCAGTGGTCCTCCTCCGGTCGAGGGTGGGTTGCGGTTCTCTAGCCTCTCTGTGGGTCATTTTGATGGCTTTGGTAACATCCTGTGCTCGGGCTTTCTGAGTGGCATGGCTCTGCCTCCCAG
Seq C2 exon
GCGGCCCTGGCAGTCTGGATCACCATCCTCCGGTTCATGGGGGACCTCCCAGAGCCCAGGTACCACACGGCCATGAGTGACGGCAGCGAGAAGATTCCCGTGATGACCAAGATTTACGAGACCCTGGGCAAGAAGACCTACAAGAGGGAGCTGCAGGCCCTGCAGGGCGAGGGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003955:ENSBTAT00000005191:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.485 A=NA C2=0.305
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGAGGACCTGGATGCAGC
R:
TGCCCAGGGTCTCGTAAATCT
Band lengths:
305-554
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development