GgaINT0104528 @ galGal3
Intron Retention
Gene
ENSGALG00000000733 | MYO7A
Description
NA
Coordinates
chr1:198127575-198128870:-
Coord C1 exon
chr1:198128667-198128870
Coord A exon
chr1:198127752-198128666
Coord C2 exon
chr1:198127575-198127751
Length
915 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGG
5' ss Score
6.9
3' ss Seq
GTTAAACTTTATTTCAACAGGCA
3' ss Score
6.82
Exon sequences
Seq C1 exon
GACCTTGAGCGAGCCCAGAAGGAGCTGGAGGAAGAGGACCTTGATGCTGCATTGCCTCTCCCTGAGGAGGAGGAGGAAGATCTCTCAGAGTACAAATTTGCCAAGTTTGCTGCCACATATTTCCAGGGCACGACAACACACACCTACATTCGCCGGCCTCTCAAGCAGCCTCTCTTGTACCACGAAGATGAAGGAGACCAGTTG
Seq A exon
GTGAGGCAGGGGAGGAAAACCCTTGAGCAGGGTGGGTTGGAGCAAGCCTGGGGAGCCTTTCACCTGAAGGGCACCAGTTTGCCTTTGGTATACACTGGTGTGTGTTCATGGTTTAGGGGAGAGCACAGCTCTTGTCCACTGGGCACACTCTGAGACTAAGACAACAAACATTAGAGGGACACGGTGGTGAGTTTATATTTAAGACAGTTCATTAAGGCTTCTGGGCTTAGGACACAAAAGATGCAAATTGTTGTGCTAGTACCTTTTGCAAAGCTGATATTTGGCAGCTGCAAATGTTGCTTCTTACCTTGACACGTGCAGAGCTAGCAGAGGAGAAAGGCTTGTCGTATAACCAACAGTACGAAGGCAGAATTATAATGAATGTTACAAAGGCCATGAACTTTGCCTTCTCTATGATTCTCCTTCTCCTCTACGGAGGGTTAGAAGTTCTCAGTCACTGTTTATTTCTTTAGGACAAGAGGTAATTGTCTTAAGTTGCTCCAAGGGAAATTCAGGTTGGATATTAGGAAAAATTTCTTCTCGGAAAGAATGATTCTGTGATTCCATCTGAATGTGATATCTTCTAGACAAGAAGCACATCCCTTGTATGTTGCTCAAACATGTTTGTGATGGCAAGAGCACGGATCATGAATTTGTGGTCCTGGCCACCAGCATACCCAACTTTTCTCACTCAGATGAGATTCATGCTGTGAGCAAATTAGTTGTGTGTCACACAGGTAGGCAAGGAGACTATAGTGATGGTGCCAATGGATTCATAGAATCATAAAATATCCGAAGCTGGAAGGGACCCACAAGGATCATCCAGTCCAACGTCTGGCTCCAGTAAGGGCGTGGTTTGACTACCACTTCCAAAGCCCTACTGCAATCTGATGGAGTTAAACTTTATTTCAACAG
Seq C2 exon
GCAGCACTTGCTGTGTGGATCACTATCCTCCGTTTCATGGGAGACCTCCCTGAGCCAAAATATCATACGGCCATGAGTGATGGTGGTGAGAAGATACCAGTGATGACAAAAATCTATGAAACTCTTGGGAAGAAGACTTATAAGAAAGAACTGCAGGCTCTGCAGGGAGAAGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000733:ENSGALT00000001046:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.426 A=NA C2=0.288
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGAGGACCTTGATGCTGC
R:
CTCTCCTTCTCCCTGCAGAGC
Band lengths:
352-1267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]