DreINT0101032 @ danRer10
Intron Retention
Gene
ENSDARG00000099871 | myo7aa
Description
myosin VIIAa [Source:ZFIN;Acc:ZDB-GENE-020709-1]
Coordinates
chr18:3145531-3146979:+
Coord C1 exon
chr18:3145531-3145734
Coord A exon
chr18:3145735-3146802
Coord C2 exon
chr18:3146803-3146979
Length
1068 bp
Sequences
Splice sites
5' ss Seq
CTGGTACGT
5' ss Score
9.57
3' ss Seq
TAGATCTGCTGGTTCTGCAGGCG
3' ss Score
5.1
Exon sequences
Seq C1 exon
GATCTGGAGCGAACACACCGGGAGCTGGAGGTGGAGGATCTAGACGAGTCTCTTCCACTCCCGGAGGACGATCTGGAGGACCTGTCCGAGTACAAATTCGCCAAGTTTTCTGCCACATATTTCCAGGGCACGAGCACACACACGTACATGAGGCGGCCATTAAAACAGCCATTACTGTTTCATGAGGATGAAGGAGATCAGCTG
Seq A exon
GTACGTGATGCTTGTTTACATAATTGTGTATATATATTGTCAAAGCAAAATTATAAATATGTAGATACAGAATATTTTAATAAAATATTTGAAAATATATATTTAGTATTTCAATCAATTCATTAATAAATAAAACAAAATTATATATATATACAGTTCATGTCATAATTATTAGCCCCCCTGAATTATTAGCACCCCTGTTTATTTTTTCCCCCAATTTCTGTTTAACAGAGAGAAGATTTTTAAACACATTTCTAAACATAATAATTTTAATAACTCATTTCTAATAACTGATTTATTTTATCTTTCCCATGATGACAGCACATAATATTTGACTAGATATTTTTCAAGACACTTCTATACAGCTTAAAGTGACATTTAAAGGCTTAACTAGGTTAATTAGGTTAACTAGGCAGGTTAGGGTAATTAGACTAGTTATTGTATAACGATGGTTTGTTCTGTATCGAAAAAATATAGCTTAAAGGGGCTAATAATATTGACCTTAAAATAGTTTTTAAAAAATTAAAAACTGCTTGTATTCTAGCCGAAATAAAACAAATAAGACTTTCTCCAGAAGAAAAAATATTATCAGACATGCTGTGAAAGTTTCCCCGCTCTGTTAAACATCATTTGGGAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATACAGAGTAAAAAAAAAGTAAGTTTGTTGTTTTTTGTCTTACTTTAAAGTATTAGGATTATAGATTTTAATCAATTTTAGTAAATTAAATTGAAAAATAATCTTCTGCTTGGCAACTAGCATAAATAAAACAAGTCTAATTAATAAAACTATTTTAATTATCTGTTAACTATAAGAACCCTGCACATAGTGTTTACTGTATAATACTGTATGCAGTTGGAAGATTTGTTTTTGTCAAATTGAGTACTACTTTCTGAATACTGTCCAAATAAAAGCTTATCATAGAGAGCTTTAACTGACCTGATTATTTCAGATGTTTCTTTGACCGTTTCTTCATTCATGTAGAAGTGTTTAATGTAGATCTGCTGGTTCTGCAG
Seq C2 exon
GCGGCTCTGGCCGTGTGGATCACCGTCCTGCGCTTCATGGGTGACCTTCCCGAACCCAAATACCACACGGCCATCAGCGACGGCAGCGAGAAGATCCCTGTCATGACCAAAATCTACGAGACACTCGGAAAGAAAACCTACAAGAGGGAACTGCAGGCACTGCAGGGAGAAGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099871:ENSDART00000166980:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.441 A=NA C2=0.271
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTGGAGGTGGAGGATCTA
R:
TGCCTGCAGTTCCCTCTTGTA
Band lengths:
342-1410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]