BtaINT0098287 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003955 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr15:57398759-57400229:+
Coord C1 exon
chr15:57398759-57398885
Coord A exon
chr15:57398886-57399966
Coord C2 exon
chr15:57399967-57400229
Length
1081 bp
Sequences
Splice sites
5' ss Seq
TAGGTCAGT
5' ss Score
6.39
3' ss Seq
CTGGCCTTGGTCTCCTTCAGGGA
3' ss Score
9.32
Exon sequences
Seq C1 exon
GCCCCAACCTCCCCAAGAACGACGTCATTGTGGCGGTCAACTGGACAGGTGTCTACTTTGTGGATGAGCAGGAGCAGGTGCTTCTGGAGCTGTCCTTCCCCGAGATCATGGCCGTGTCCAGCAGTAG
Seq A exon
GTCAGTCTAGCCCCTCACACCCCGCTTTAGTGCAGGGCGGGGACTTGTCCGGAGCCGCACAAAGGCCAGTGGCAGGGGTGGGACTCAAGTGCAGGGTCCTGATTCAACACTTTCTGAAGTGAAGCAGGCAGATGGAGACACAGTCAGACAGAGCGGGGAGGAGAGGGCTTCGAGGTCTTTCCTGCAGGTCATGGGGGCCTTGGAGGGAAGCCCCTACCTCACAGAGGACATGACCAAGATGCAGAGACACACAGTGGCCTGTCCTGCTCGCACATGATTGAGAGTATGTGCTGTGCCCTGCAGACCCCCGGCACCTTCCTCCCAATAGGGTGGGGGGTGGGTCTTTATGGCACATTCCTGGTTGTGCTGAGAACAGTGGTTAGAACAGTCAGGGACAGTCAAACATGTGCAAAAAGAGCTGGCCTGACACCCAGGGGCCTGAGTGGGACTCGCCTCCATGTCCTCATCTCTCAAATGGAGGTCCTAACTTTCCTGCAATAACAGAGTAACAGTGGTGAGGAAAAAATGCCACAGTTGATGGGAGTCTTTGTAAACAGAGAAGCGCGATGCATATGGGAGCAGCGTGGGGAGTGGGTCCTGCAAGGGACTCTTCCCAGCAGTGCCTCACCCCCATCCGGGGCTTGTAGGAGTGTCTCTGAGCTGTGTCCAATGTGGGCCAGACTTGGGTCATGTCCAGCTCTGACCGAGCACCTGGGATGCAGTGGTGCCAAGATAATCCTTGTTCTCTTGTAGCTGCAGTTGAGAGGGGAGATGGACATCAAATAAGCCATTTTTCAAGTAGGGACCAGTGTGCTGAGGTCTGTGGGAGGGCTTCCTGGAGGAAATGGTAGATAGGCTGAGCCCTAAAGGGTGAGTAGGAATTAGACAACAAGAGGGAAGTGAGCTCCCCAGGCAGGCCTCCCCAGGCCATGGATGACTCTGGCCCAGCCATGGATGACTCTGGCCCAGCCACGGCTGACTCAGGCTGAGCTCTGGCTCCCGGGGCCCTTTGTCACCCTGGCTGGGCCGGCCTCTCTCTGGTCAGGCCACTCCTGACTGGGCTGGCCTTGGTCTCCTTCAG
Seq C2 exon
GGAGTGCCGTATCTTGCTCTCGCTGGGCTGCTCTGACCTGGGCTGTGCTGGACTGACCCCGACGGGGCCCTGTTCTCCGTGTTGGTCATGCAGGGGAGCGAAGTTGGCGGCCCCCAGCTTCACGCTGGCCACCATCAAGGGGGATGAGTACACCTTCACCTCCAGCAATGCTGAGGACATCCGTGACCTGGTGGTCACCTTCCTGGAGGGGCTCCGCAAGAGGTCTAAGTATGTGGTGGCCCTGCAGGACAACCCCAACCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003955:ENSBTAT00000005191:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.022
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF146041=SH3_9=PU(13.6=9.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTGTGGCGGTCAACTGGAC
R:
GCAGGGCCACCACATACTTAG
Band lengths:
347-1428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development