GgaINT0104538 @ galGal3
Intron Retention
Gene
ENSGALG00000000733 | MYO7A
Description
NA
Coordinates
chr1:198115641-198116041:-
Coord C1 exon
chr1:198115915-198116041
Coord A exon
chr1:198115811-198115914
Coord C2 exon
chr1:198115641-198115810
Length
104 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
3' ss Seq
CCTATAAAAACATATCCCAGGGG
3' ss Score
2.1
Exon sequences
Seq C1 exon
GGCCAAGCCTACCTAAAAATGATGTAATTGTGGCTGTCAACTGGACAGGAGTGTACTTTGTGGATGAGCAGGAGCAGGTTCTCTTGGAGCTCTCTTTTCCAGAGATCACAGCTGTGTCAAGCAGCAG
Seq A exon
GTAAACTTAGCTGATGTTCTCCCCCTGAAACAGTCTTTTTCTTGATTCTGCCTTGTGATACCATTATATTTCCTATTTATATCTCCTATAAAAACATATCCCAG
Seq C2 exon
GGGGGGAAAGCTGCAAGGGCAGAGTTTCACCTTGGCCACCATTAAAGCAGATGAATACACTTTCACCTCCAACAATGCAGAGGATATCCGGGACCTGGTAGTGACATTCCTTGAGGGACTAAGAAAAAGATCCAAGTATGTGGTCACTCTCCAAGACAACCCAAACCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000733:ENSGALT00000001046:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.034
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTTGTGGATGAGCAGGAGC
R:
CAGGGTTTGGGTTGTCTTGGA
Band lengths:
243-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]