RnoINT0097392 @ rn6
Intron Retention
Gene
ENSRNOG00000013641 | Myo7a
Description
myosin VIIA [Source:RGD Symbol;Acc:628830]
Coordinates
chr1:163015181-163016051:-
Coord C1 exon
chr1:163015925-163016051
Coord A exon
chr1:163015351-163015924
Coord C2 exon
chr1:163015181-163015350
Length
574 bp
Sequences
Splice sites
5' ss Seq
TAGGTGGGG
5' ss Score
3.33
3' ss Seq
TCTCCGTGTTGGTCCTGTAGGGG
3' ss Score
9.18
Exon sequences
Seq C1 exon
GCCCTCCCCTCCCTAAGAGTGACGTCATCGTGGCTGTGAACTGGACGGGCGTCTACTTCGTGGACGAGCAGGAGCAGGTGCTTCTGGAGCTGTCCTTTCCGGAGATCATGGCTGTGTCCAGCAGTAG
Seq A exon
GTGGGGATGGCCACCAGGGCGCAGACAGTGATGGGAGGAGAGGGCTCAGCTCTTGGGGACCCCGTATAACTCGGGGTTAATCAATGTTATCAGTGGGGAGTTCTTTGTCAGCTGAAAAGCACCCAGAGGGTGGTAGGGTTCTGGAATAGTCACACGCCATAGGGCAGTGCAGCAAAGAGCATCTGTCTGGGGCTTGTGGGAGTGTGTCTCAGAGATGGTGAGGGTAGGGAAGGCTTCCTGGTGAAGAGGCATCAGGCTGAACCTGATGAATAAGGACATAGATGGACAATATGCAGTCAGGGCGGGCCGCTTCTGGACCAGAGCTGGCTGTAACCATGGTTACAGCTGCCTTAGAGGGTGATGTGACTGAGTTTATCACCCCAGTGGACCAGGCCTTGTTCCGACCAGGCACTGTCTGGGTGTCTGGGACACTCTGACAATTGGCCTTGGTCCCCTTCAGGGAGTGCCGCGTCTTGCTCTCATTGGGCTGCTCTGACTTGGGCTGTGCTTCTTGTCACTCGGGCCGGGCAGGGCTGACCCCGGCTGGACCCTGTTCTCCGTGTTGGTCCTGTAG
Seq C2 exon
GGGAGCAAAACTGATGGCCCCCAGCTTTACACTGGCCACCATCAAAGGGGATGAGTACACCTTCACATCTAGCAATGCTGAGGACATCCGTGACCTGGTGGTCACCTTTCTGGAGGGGCTCCGGAAGAGGTCTAAGTATGTGGTGGCACTGCAGGACAATCCCAACCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013641:ENSRNOT00000019053:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.034
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF146041=SH3_9=PU(13.6=13.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCCTCCCTAAGAGTGACG
R:
CAGGGTTGGGATTGTCCTGC
Band lengths:
294-868
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]