DreINT0101088 @ danRer10
Intron Retention
Gene
ENSDARG00000044632 | myo7ab
Description
myosin VIIAb [Source:ZFIN;Acc:ZDB-GENE-091110-4]
Coordinates
chr21:22259526-22259923:+
Coord C1 exon
chr21:22259526-22259652
Coord A exon
chr21:22259653-22259753
Coord C2 exon
chr21:22259754-22259923
Length
101 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCAT
5' ss Score
4.89
3' ss Seq
TTTAATCAATGTGCTTTCAGAGG
3' ss Score
6.89
Exon sequences
Seq C1 exon
GGCCGAGTCTTCCAAAGAATGATGTTATAGTGGCTGTGAACTGGACGGGAGTCTACTTTGTGGATGAGCAGGAGCAGGTCCTTCTAGACCTTTCTTTCCCAGAGATCACTGCGGTCTCCAGCAGCAG
Seq A exon
GTGCATTACATTATCCAACCAAACACACTTCATTTGATCTAAGTGCTCACTGTATTATACATTAACTCATTTTCATCCACTTTTAATCAATGTGCTTTCAG
Seq C2 exon
AGGTGGAAAACTGCAGGGACAGAGCTTTACCCTGGCCACTATTAAAGGAGATGAGTACACCTTCACATCCAACAACGCTGAAGACATCCGGGATCTGGTTGTGGCTTTTCTAGAGGGCCTGCGTTCCAGGTCAAAGTTTGTGGTGGCAATGATGGACAGCCATTATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044632:ENSDART00000148019:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0037313=FERM_M=PD(24.0=93.0)
A:
NA
C2:
PF0001823=SH3_1=PU(6.0=5.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAGTGGCTGTGAACTGGACG
R:
TGCCACCACAAACTTTGACCT
Band lengths:
249-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]