DreINT0101043 @ danRer10
Intron Retention
Gene
ENSDARG00000099871 | myo7aa
Description
myosin VIIAa [Source:ZFIN;Acc:ZDB-GENE-020709-1]
Coordinates
chr18:3158634-3160794:+
Coord C1 exon
chr18:3158634-3158760
Coord A exon
chr18:3158761-3160624
Coord C2 exon
chr18:3160625-3160794
Length
1864 bp
Sequences
Splice sites
5' ss Seq
CAAGTACGA
5' ss Score
5.39
3' ss Seq
TGGACTTCTGTGTTTGTCAGAGG
3' ss Score
5.73
Exon sequences
Seq C1 exon
GTCCTAGTTTACCCAAGAATGATGTGATCGTGGCTGTAAACTGGACCGGTGTGTATTTTGTGGACGAGCAGGAGCAGGTTCTTCTGGAGCTCTCCTTCCCAGAGATCACAGCCGTGTCCAGCAGCAA
Seq A exon
GTACGACTTTAATACTGTGATTTACCTGCAGGGATTATACAGCTGAAGAGAACATTATTAGCATTTTTTACACCCATTTTATTTAATGTTTCAAACATTTACCAAGTGCTGTTTAACAGTACAAGGAATTTTTTCTCAGTATTTTGTATTATAATTTACTTTTGGAGAATTATTTTTTTTTCCTTTTAGTTTGGCTGGAATAAAAAAAATAAATATGATATTAATTAATATTAATTATATAATATTATTAGAACTCTTAAGAGATTATATTTTTTGATTGGCTACAGAACAAACCACTGTTGTCTAGTGACTTGCCTAATTAGCCTAAATTGCCTAGTTAACTCTTTTCCCACCGTTGATAATTTTTGAGAGTTTGTGTTTTAGGTAGATAATGGTAAGGGAAGCCCTAACATATGTCATGGGTGAGTTTCAGGACTTCTGGTTCTCCTGTGAGCGAGATAAAAGACAATCAGAGAAAGTAAAATCAGATTGCATGTAAATATATACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTATATATATATATATGTATATGTTGTTAAACAAAGAAAGGAAATTTTCACAGTATGTCTGATAATATTTTTTCTTCTGGAGAAAGACTTATTTGTTTTATTTCGGCTAAAATAAAAGCATGTTTGAATTTTTTAAACACCATTTTAAAGACAAAATTATTAGCCCCTTTAAGCTATATTTTTTCTCAATAATCTACAGAACAAACCATCATTATAGAATAACTTGCCTAATTACCCTAACCTGCCTAGTTCACCTTTATTAACCTAGTTAAGCCTTTAAATGTCACTTTAAGCTGTATAGAAGTGTCTTGAAAAATATCTAGTCAAATATTATTTACTGTCATCATGGCAAAGATAAAATAAATCAGTTATTAGAGATGAGTTATTAAAACTATTATGTTTACTATTGTGTTGAAAAAAATCTTCTCTTCTCTCTGTCAAACAAAAAAAAAAAATAAACAAGGGGCCAAAAATTCTAGGGGGCTAATAATTTTGACTTCAACTGTATATATATATATCTTGACAATTCACTACTTTTAGTCAAAAGTGTTGCATTTGAAAAACAAGAACACATGAAGATAGAAGATATACATAATCTATAAACATATATATATATGTGGGCAAAGCAGTGGCGCAGTAGGTAGTGCTGGCGCCTCTCAGAAAGAAGATCGCTGGGTCGCTGGTTCGAACCTCGGCTCAGTTGGCGTTTCTGTGTGGAGTTTCCTCCGGGTGCTCCTGTTTCAAAGACATGTGGTACAGGTGAATTGGGTAGGCTAAATTGTCCGTAGTGTATGAGTGTATGTGTGTGTTTGTGGATGTTTCCCAGAGATGGGTTGTGGCTAGAAGGGCATCTGCTGCGTAATAACGTGGTGGATAAGTTGGCGGGTCATTCCGCTGGGGTGACCCCGGATTAATAAAGGGACTAAGCCGACAAGAAAATGAATGAATGAATATATATATATATGTTTTTGGTTTAAAAGGAGAGGCTCAGTTCCTAGCAGTAAATATTAATTTAGGTAGAAATCATCAACAAGTCTGGTGGTGAAAAAAAACAATGAAAATGTCACTTTTAGCTGAATACTAGTATCTTGCAAAATAACTAATAACTTATTGAGTACTGTCATCATGGCAGTGAAATTAGTTATTAGAAATTAGTTGTGTAAACTGTTATTTTTAAAAATGTGTTGAAAAAAATTCTCTGTAATAACTTGCGAAAATATTTCAAAAGAATAAACGTTTCACAGAATGGCTAATAGTTTATTCTTCCTTCTGTGCTGAATGAATGGACTTCTGTGTTTGTCAG
Seq C2 exon
AGGCGGGAAACTTCAGGCTCAGAGCTTCACTTTGGCCACCATTAAAGCAGACGAGTTCACCTTCACCTCTAATAATGCAGAGGACATTCGGGACCTGGTGGTCACTTTCCTGGAGGGGCTGCGCAAGAGGTCAAAGTTCGTCGTGGCCTTGCAGGACAATCCCAGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099871:ENSDART00000166980:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF146041=SH3_9=PU(13.6=13.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTAGTTTACCCAAGAATGATGTG
R:
GACTGGGATTGTCCTGCAAGG
Band lengths:
294-2158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]