BtaINT0098293 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003955 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr15:57405467-57406238:+
Coord C1 exon
chr15:57405467-57405622
Coord A exon
chr15:57405623-57406132
Coord C2 exon
chr15:57406133-57406238
Length
510 bp
Sequences
Splice sites
5' ss Seq
GAGGTACGG
5' ss Score
9.4
3' ss Seq
CTTCTTCACCTGGTTTTCAGAAA
3' ss Score
7.95
Exon sequences
Seq C1 exon
GTACAGTGAGGAGCGGGGCTGGGAGCTACTCTGGTTGTGCACAGGGCTCTTCCCACCCAGCAACATCCTCCTGCCCCACGTGCAGCGCTTCCTGCAGTCCCGCAAACACTGCCCACTTGCCATCGACTGCCTGCAGCGACTTCAGAAAGCCCTGAG
Seq A exon
GTACGGCCGTCTGCAAGGGACAGGGGGCAGCGGGCACAGTGTGGGCCCTGGGATGGGCTTCCGGCCACATGGGCTAGGGAGACAAGTCCCTTGCGATGCTGAGGTCATGACAGTGGTTGGGACCCATTTTTGGGGTCCCACAGCTGCCCAGTAGACAAAGGTTGCAGTGCCTAGTACCATTCTGGACATCTTGAGAGTCTGGTTGCTCAGAAAGCTATTTTCTGTCAAGTCTGTTGGGGAGGCAGATGCCAGGGTTGCACTGCATACTCTGTGAAGCTCACTTGCGTCCTTGGCTTCATTACGGTCCCCTCCGCATCCCTATTGGTGGGTACCATTATAATCTTGTTTTACAGATGAGGAACAAAAGCCTTGGGTTTGTGACTGTCACCTAGTAGGAAGTGGTGGACAGGGATTAGGACTGGGGTTTGCCTGACTCCGAAGTTCCCTCTGTTCTCTGCTTCCCATGGCTACTTCGTGACTTGGCCCCTCCCTTCTTCACCTGGTTTTCAG
Seq C2 exon
AAATGGGTCCCGGAAGTACCCCCCACACTTGGTGGAGGTGGAAGCCATCCAGCACAAAACCACCCAGATTTTCCACAAGGTCTACTTTCCTGATGACACTGACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003955:ENSBTAT00000005191:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0078412=MyTH4=FE(48.6=100)
A:
NA
C2:
PF0078412=MyTH4=PD(15.9=47.2),PF093795=FERM_N=PU(8.5=22.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACAGTGAGGAGCGGGGC
R:
CTCGTCAGTGTCATCAGGAAAGT
Band lengths:
262-772
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development