GgaINT0104544 @ galGal4
Intron Retention
Gene
ENSGALG00000000733 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr1:192363814-192364278:-
Coord C1 exon
chr1:192364123-192364278
Coord A exon
chr1:192363920-192364122
Coord C2 exon
chr1:192363814-192363919
Length
203 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAG
5' ss Score
8.04
3' ss Seq
TGCCTCCTCCTGTTTTGCAGGAA
3' ss Score
10.88
Exon sequences
Seq C1 exon
GTACAGTGAAGAGAAAGGCTGGGAGCTGTTGTGGTTGTGCACAGGCCTTTTCCCTCCAAGTAACATCCTCCTGCCCCATGTCCAGAGGTTTCTTCAGTCCCGGAAACATCACCCGTTGGCAGCAGACTGCATCCAGAGACTCCAAAAAGCCCTAAG
Seq A exon
GTACAGCACCAAAAGACCTCCTAATCCTGACCATGTCACAGCATCCAAATATGCATGAGAAACAATAAGTAGGAGATATTTTGGTGATTGCAGGGACAGTGAAATCTCACAGCCTCTCTCTTCATTCAACCAAGACTAATTAAAAGTATGTCTGCTGGACGATGTTGCTTATTCTGTGGCACCTGCCTCCTCCTGTTTTGCAG
Seq C2 exon
GAATGGGTCCAGAAAGTACCCTCCCCATCTTGTAGAAGTGGAAGCCATTCAACACAAAACCACCCAAATTTTCCACAAGGTTTACTTTCCTGATGACACTGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000733:ENSGALT00000001046:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0078412=MyTH4=FE(48.6=100)
A:
NA
C2:
PF0078412=MyTH4=PD(15.9=47.2),PF093795=FERM_N=PU(8.6=22.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTGAAGAGAAAGGCTGGG
R:
CTCATCAGTGTCATCAGGAAAGT
Band lengths:
260-463
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]