RnoINT0097399 @ rn6
Intron Retention
Gene
ENSRNOG00000013641 | Myo7a
Description
myosin VIIA [Source:RGD Symbol;Acc:628830]
Coordinates
chr1:163007671-163008378:-
Coord C1 exon
chr1:163008223-163008378
Coord A exon
chr1:163007777-163008222
Coord C2 exon
chr1:163007671-163007776
Length
446 bp
Sequences
Splice sites
5' ss Seq
GAGGTACTG
5' ss Score
7.67
3' ss Seq
CTCTCCCTCCGTGTTTTCAGAAA
3' ss Score
10.07
Exon sequences
Seq C1 exon
GTACAGCGAAGAGAAGGGTTGGGAGCTGCTGTGGCTGTGCACAGGCCTCTTCCCACCCAGCAACATCCTCCTGCCTCATGTTCAGCGTTTCCTGCAGTCCCGCAAACACTGTCCTCTTGCCATTGACTGCCTACAAAGGCTCCAGAAAGCCCTGAG
Seq A exon
GTACTGGAGCCACACCTCCCCAACCCCGCCCCCACCAGCACTGAGGGGCGGGGCAGCCTGACCACGCCCAGCTGTAGGACAGACCCTTGGCGCACAGTGCGAAGCCCACCCCTGAGTTCCCCAGCTTGACAGAGGCAGGAGCTGCAGCCCATGCTGCCCATGCTGGCTACAGTTGGAGCTTGGCTGTTCCTCGAGTGGCTTTTGCCTTCTGGAGGACTGAGAAGGTGGCCCCTGGGCCCCACTGCAGACTCTGCAAAGCTCACTCACACCCTTTGCTCTTGCTCCCTCCCCTTGGTCCAGTCACCATCCCACTTACTGGCTGGGAATGCTGGGCATGAAGATGGGAGTCAGGGTGGGGCCAGTCTCCTGTTCCCTCTGCTCCCGGGCTGTACAGCTGTACGGACCTAGTAACATGCTTCCTTTCCTCTCTCCCTCCGTGTTTTCAG
Seq C2 exon
AAACGGGTCCCGGAAGTACCCTCCACACCTGGTGGAGGTAGAGGCCATCCAGCACAAGACTACCCAGATTTTCCACAAGGTCTACTTCCCTGACGACACGGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013641:ENSRNOT00000019053:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0078412=MyTH4=FE(48.6=100)
A:
NA
C2:
PF0078412=MyTH4=PD(15.9=47.2),PF093795=FERM_N=PU(8.5=22.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACAGCGAAGAGAAGGGTTGG
R:
CTCATCCGTGTCGTCAGG
Band lengths:
262-708
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]