DreINT0101094 @ danRer10
Intron Retention
Gene
ENSDARG00000044632 | myo7ab
Description
myosin VIIAb [Source:ZFIN;Acc:ZDB-GENE-091110-4]
Coordinates
chr21:22263604-22263944:+
Coord C1 exon
chr21:22263604-22263759
Coord A exon
chr21:22263760-22263838
Coord C2 exon
chr21:22263839-22263944
Length
79 bp
Sequences
Splice sites
5' ss Seq
GCGGTAACT
5' ss Score
6.77
3' ss Seq
CATTTTCTCCTGATGGACAGTAA
3' ss Score
2.68
Exon sequences
Seq C1 exon
ATACAGTGAGGAGAAGGGCTGGGAGCTGCTCTGGCTCTGCACTGGACTCTTTCCTCCCAGTAACATGTTGCTCCCTCACGTCCAGAAGTTCCTGCAGTCCAAGAAACATCATCCGGTTGCTCCAGACTGCATGCAGAGACTGCAGAAAGCCCTGCG
Seq A exon
GTAACTACCCCAAACACACTTAAACATCTATCGCTACTGTTACATGCATTCCTTTAAAACATTTTCTCCTGATGGACAG
Seq C2 exon
TAATGGGTCCAGAAAGTATCCTCCTCACCTTGTAGAAGTGGAGGCCATTCAGCACAAAACCACCCAGATCTTTCACAAAGTGTACTTTCCTGATGACACTGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044632:ENSDART00000148019:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0078412=MyTH4=FE(48.6=100)
A:
NA
C2:
PF0078412=MyTH4=PD(15.9=47.2),PF093795=FERM_N=PU(8.5=22.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTGCACTGGACTCTTTCC
R:
TGGCCTCCACTTCTACAAGGT
Band lengths:
170-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]