BtaINT0098310 @ bosTau6
Intron Retention
Gene
ENSBTAG00000039803 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr2:4874845-4879015:-
Coord C1 exon
chr2:4878873-4879015
Coord A exon
chr2:4875056-4878872
Coord C2 exon
chr2:4874845-4875055
Length
3817 bp
Sequences
Splice sites
5' ss Seq
TAGGTATGG
5' ss Score
7.37
3' ss Seq
GGGCGGTGCTGCGCCTGCAGCTT
3' ss Score
4.6
Exon sequences
Seq C1 exon
GGCATCTATGGGCATCTCTTCCTGTGGATTGTCAAGAAGATCAATGCTGCAATCTTCACCCCACCTGCCCAGGACCCCAAAAATGTGCAAAGGACAATCGGCCTCCTGGACATATTTGGTTTTGAAAACTTCCAGAAAAATAG
Seq A exon
GTATGGAGGTCCCCGCACCTGTTTTCAGAAAAATGAGAGATAAGCTTAGGTCCTCCCTGAGCCAACTGGAACTCAGCCATTCCTCCCCAGACTGGCTGGGAGCAGGGCCTCGCCTCCGCTCACAGACGCCAGGGTGAGTCCCTCAGCAAGACTGTGTCCTTCCTCAGTGAGGCAGTCCACGCTCATCCCCTGGCATCCACAAGGTGTCTAGAAAAGGCCATATAGCTAAGAGCATCATGAGAGTCAGGCTGACACTCCAGCACTCATTGCCCATCTCGAGCCATCCACTCTTCCTTCTCACAAACTAGAGTGAATTATCACGTGTGGTTAAGGCGAAAGTGGAAATCAGTGACACTAATGTGACTGCATCCTTGGGTGGGCTATCATACTAGGTGATGGGGAAGGCAGGGGATTTGTGGCCCATCCCCAATTTTTCAGTCTGACAAGGGTAAGGTGAGGCAGGACACTTCTGACCCACTGTCCCAGCCTGGAGGCTGAAGAGCTAGAGAAATGAAGCAGGTCAGAAAAGTAATTCCCAGCGAAGACTGCGATGAAGACTGGGGTGGAAGTAGACAGAGGCAGCAAGGGGAGCCAGGCCGTGGAGCTGGACGAGGGCAGGTGATGCTCTGCGGAAGTATCATCAAAGGGCCAGAAGAGGACACAAGGACGGGGGACAAGCAAGCAGGAAGTGCAACCTAGCTTCCCAACGTGAGCCTGGCTCGTTTAAAGCATCGATGAGACAGAGCCTAGGCCTAGTTCCATTACCAAATGGAATTCAGGTCTGCTCACCCAAAGTACACCAAAGCCAGTGTACTGACACCAGGGTGTGGTGAAGCAAAGCACAACACTTATTGCAGGGCCGAGAAGGAGAGCAGGCAGTTCATCCAAATTTGAGGCAGCTCAAAATCCAAATTCCTTGATGGCTTTCAAGTAAAGTTTTTTAAAGGCAGTTTTAGGAGTGAGAGTCACAGGGTACACAATCAGCTTGTGGACTTTCTTCTCATTGGTTGGTGGTGAGGTAATGGGGTGATGTTTAGGGAATCTTAATCATCCACATCTGGTTCCAACCAGTCTGGGGTCTACATGCTTGTGACCAGCACGTAGTCACTATACTCCACCTGGGCAGGGGTCTTAGTTTCTGCAAAACAACTCTAAGAGATCCCTTGAGGAAGAACTAGGACTCTGTTTTATCACTGCACTATTGCTTCTTGACTGCATTTCTTCACTTCCCTAATTGGTCTTGAGTCTGCTCTTAGGACTCAGAGATGTCATAGGAGACTAAAGCCTTTTGCTACAAATAAGAAATGGGGGACAAGGAGGGAGTTTTGTATTCAGGAGGGCCCCACAGGGTTCTGCTTGGTTTCAGTCCCAAGTGGAGGTCTCCGGGCACTGTCAGAGATGCCAAAGGGCTGTCCTGACCTTGGCATGCCCCTGCCCAAGGCCCTGTCTCCAGCTGAAGGCTGAGAAGGCCCCTTGGTCAAGATGCAAGCCATTCTGAGTGCATGCACATTGGGATTGCAGGTTCCTAGGACCAGCTCACCATGGGCAGGTGGAATGGGGCAGGGCTGGCAGAACTCAGCCCAACATGACGGAAGCTCTAAGGAGCAGAAAAATAAAAAATGATTCTGATCATTGGTTTCTGGCCCTGAGAGGGGCAGCTAAGCAGACCAAGCATATCTTTGGCCACTGTGGAGCTGGATGAGTAGTTTATTTTGGGGGATCTGGCCATTTATTAAGGGACACCCTCCCCTCCACCCCCTGTGAAGAAGCCACAAGCTGGGTTTATGGCAGGGCTGCAGTCTGGGGGCCACCTGAAGGAGCAGGGCCATGTCACTCAGCACCCAGTCACTTACCCGAACTGCCTTCTGCAAGGGTGCACCGAGTACTCTTGTCAACTGAAACAAAGTGCATGACCTAAAAGTTGAGACTTGTGTTTTATTCAGCAGACATTCCTAGAACTTCAGGCCCAGGAGACAGCATCTCAAATAATTCTGACAAAAATGCTCCGAGGAGGCGAGGGTAGAGCCAGGATATATAGGAGTTTTTTGCAACAAAGGGCAGGTAGAACATCAAAAGATTATTGTTAATAAAAGAAAACTAGATATCCCAAGTTAAGGTATTTGGCACTTTTCTGTGTATGGAAAGATGCAAGAGTCTGGGTTCACTGAAATCGTTCCTTTGATATGTATCTCAGATATCTGGGGCCAGCATTCTGTGTTTTCACATCCTGAGTTTCTTCAAGCTCTACTGTTGTGAGTGGCTGCAATCTAATGGGACATCCCCAATGGCTCAGCAGTAAAGAATCCACCTGCATGCAGGAGACGTGGGTTCGATTCCTGGGTCAGGAAGATCCCCTAGGGGAGGAAATGGCAACTCACTCCAGTATCCTTGCCTGGAAAATCCCATGGACAGAGGAGCCTGACAGGCTACAGGCCAAAGGATCTCAAAGAGTTGGGCGTGACTGAGTGACTGAGCACACAGGCAGTCTGATGACTGCTAGGTGGCCAGTATTCCTGGTCTCCATCCTGAGTTCCCTCAGGGCTCATTGTCCAGGGTGGCTGCAATCGCTGATGGCTACAGCATCACTCCACGATGTCCAGGCAGTGTGTTAACTCTCTTGGGTTAACAGACCTGAACAACCAGCCTGAGGAACCATAAGGTTTTGCATAAATGGGCAACCCATCCTGAGGAAGAAATGCCTAAGTGAGACCCAAAGGATGAACCAAAAGAGCAGGTCAGAGAAAGGAGGGTCTCACATGTGTGAAGACTTAGAATTAGAGAAGGGCAGGGCGCCCTGTTGGAGAAGGAGGTGGCAACTCACTCCAGTATTCTTGCCTGGAGAATTCCATGAACAAGAGGAGCCTAGCAGGCTATAGTCCATGGGGTCACAAAGAGTCAGACATGGCTGAGCAACTATCACTCACAGAGTCCCCTGCGTCCATTCCCTGGCTGTGTTGGGCAGGCTTTCCACTGTGTCACTGTCTGTCTGGATCATGAAAATAATGGGAGCTCAGGTCCACAAGGATTCAAGGCAGGGGGAGAGCAGGTCCCTGCTCTGCACGTCCGAAACCTCTGTCTGGTGGCCACAGAGAATGGTTGGAGGGGTGAGGCTGGAGGCAGAGAGAGCCATGAGGCGGTTGTTATTGCACTCCAGGTGAGAAAGAGGGTGACCTGGATTAAGGGAGCAGCAGTGGGAGTGAAAAGAAGTAAACAGGTTAGGCGCTGTGTTGGAGAGAGCGCAGCCGGACTTTGGCAACGGGTTGGAGTTGGGAACGAGGGAGAGGTGTCAGGTATGACGGCCTGGTTTCTGACCTGAGCCGGGGTGATGAGTGGAGGGGCCACTTCAGGAGGTGAAATGGAGCCCAGGAGGAAGAACGAGTGGGAGGACTCGGGGAGGGGAAAGGGGTATGTCTGACTGATGCAAAGGAGCCCAGCCATCAATGACGGGTCTCCAGAAGCTTGTCTTAATACCCAAGCCACTTGCCCATGGGGCAGGGTGGCTACTGGACCCTTGGCCCCCAGATATTGTCTCCATGTCAGGACAGCCTAGTTTGGCAGAGGATCCTGCTGGGGACCTTATGGAGTCAAAGTCAGGGCTTGATGCTAAGTGCAGCCTCCACATTTCTCTGAATCTGTTTGCTGTGGGATGGAGGAGGGGATGGAGGCAGAGGCAGGGGAAGAGGGAGGCTATCTCTCGGCCTGTATGGTGTTTGGGGGTGTGTTCTGTGGGTACACATGTGTGGGGCTGTGTGCCAGGGGTTGGCTACAGTGGCAGCCAGGCCAACCTTGCCCCCCTGGGGCGGTGCTGCGCCTGCAG
Seq C2 exon
CTTCGAGCAGCTCTGCATCAACCTGGCCAACGAGCACCTGCAGCAGCTGTTTGTGCAGCACGTGTTCACCGTGGAGCAGGAGGAGTACCGCGCGGAGAGCATCGCCTGGGACTACATTCACTACACCGACAACCGGCCTACCCTGGACCTGCTGGCCCTCAAGCCCATGAGCGTCATCTCCCTCCTGGATGAGGAGAGCCGCTTCCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039803:ENSBTAT00000061382:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.1=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(10.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]