RnoINT0097416 @ rn6
Intron Retention
Gene
ENSRNOG00000015035 | Myo7b
Description
myosin VIIb [Source:RGD Symbol;Acc:1561153]
Coordinates
chr18:24789943-24791302:-
Coord C1 exon
chr18:24791160-24791302
Coord A exon
chr18:24790154-24791159
Coord C2 exon
chr18:24789943-24790153
Length
1006 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
TGGTGCTGTTGATTCTACAGCTT
3' ss Score
6.91
Exon sequences
Seq C1 exon
GGCATCTACGGGCACCTCTTCCTGTGGATCGTCAAGAAGATCAATGCTGCGATCTTCACTCCCCAAGCCCAGGATCCCCAAAATGTGCGGAGGGCCATCGGTCTCCTGGACATATTTGGCTTTGAAAACTTTCAAAACAACAG
Seq A exon
GTATGAAAGTCCCAACCTACATTATTTCTGAAGATCGTAGATGGAAGCTCAGCCATGCAGGCTTGAGCTTTCTTCGGCGCTCACGGGAAAAGCTGCATGGTGGCGCATGCTCATAACACAGGTGGTGGGGAAGTAGAAATAGGAGGCTCTCTGCAGTCCAGTGCTAAATTGGTGAAGAGACTAAAAAAATCAAAACTGGATGTCATCAAGGACCAATATCTACAGTTGAGTCCACATACATACACACATGCATAAGTGTACCTCTGAACATGCATGTGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGAGCAGTGATTTTGACCAGGCTTGAGAGTATCTATCTGTTTCCCTCACCCTACCCTGGCCACTGGGGTAAGAGCGAGGACTTGACACTCCCAACTCATAATTTGGGGTGCCTAAGCAAGATTGGACCTTCTGCAAAGACAGTTCAAAGGCATCTGACATCCCACTGCCCAATCCATAGACTGAAAGCTACACCCAAGAGTCAGGCTTGTTTCCTAGCATTACTCACGCCCTTGAACCACCGACTCTGTTCCTGATCTAGGGCAACTTACCACAGGGGGTCAGTTGATAACAGAAATGGCTTTGTGGAGCATTTCTGGCCTCGAGTTGAGGAGTGAGCGAGCTCAGGCAGGACATCTCAGATCCAGTGTCCTGGAGCAACTGGAAGCAGGCTGGGCATTCTACTCCACTTCGCTAAAGGCAGGGGGAGGAAATGAGGTGGGCAGGGGCCCAAACTGGACAGGTGATATCCAGGGCAGAGCAGAAGGCAAGAGCTGGCCAGTGGGGAAATGAAGGGGGCGGTGCCGTTCCAGAGTGTTTAGGGTCAGAGCCTGGACCCGAGAGCCCCCTGGAGTCCGAGCAAAGGGAAGCATGTATTTAGAGGTAGACCTACTCGTGAGGCTGTGTGCGTGCTCCACCCTGAGAGGATGGTGCTGTTGATTCTACAG
Seq C2 exon
CTTCGAGCAACTCTGCATCAATTTCGCCAACGAGCACCTTCAGCAATTCTTCGTGAAGCACGTGTTCACCATGGAGCAGGAGGAGTACCTGTCTGAGAACATCACTTGGAACTACATCCACTACACGGACAACCAGCCCATCCTAGACATGCTGGCCCTCAAGCCCATGAGCATCATCTCTCTCCTGGATGAGGAGAGCCGCTTCCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015035:ENSRNOT00000021405:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.9=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(10.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTCTTCCTGTGGATCGTC
R:
CTGTGGGAAGCGGCTCTCC
Band lengths:
342-1348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]