GgaINT0031399 @ galGal3
Intron Retention
Gene
ENSGALG00000001936 | MYO7B
Description
NA
Coordinates
chr9:2277552-2279379:+
Coord C1 exon
chr9:2277552-2277694
Coord A exon
chr9:2277695-2279168
Coord C2 exon
chr9:2279169-2279379
Length
1474 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
CCCATCTTGTCCCCTTACAGCTT
3' ss Score
11.04
Exon sequences
Seq C1 exon
GGTATATATGGACGGATTTTCCTGTGGATAGTGAACAAGATCAACTCAGCCATTTTTAACCCAACTTCTCAGAAGCCTAAAAATACACGCCAGTCCATTGGGTTGTTGGATATTTTTGGGTTTGAAAACTTTAGCAACAACAG
Seq A exon
GTAGGAGGCTCTAGATTCATTTGCACTGGGGTGCTGAAAAGCAGTTAATGTAAATGGAAAAAATGAAAAAAAAAAAAAAAAAACCAAGCAAATTTCATTATTATTGTCATTCCCAGAGAAGCAGTGGAATTTCCATCACTAAGTTTCCCCAATGACAATCTAACACAAATACCATTTTTCTTTAGTCTTGGTCACATTTCTGCTTTCTCCTTATGCTTTCACTGTGGTGCAGCCATTGCAAATGTCTATTCCAGAACCCCAGGAATTTGCTCAGGAAAGATGTCTATGAAGCTGCTATGAGCAGGCAGCCATGAACAGATATATGTTCCCCTTGTTTCATAGCATTTTAACAAGACCTCTTGGGATGCTTCTGTACATAGCATAAAGGAAACTGTGTTTTGATTCCCATTTCACCTATGCTTCTGTTTTGCTCAGTGTTCCCCTGTCACTCTTTGGGGACTACTTAATTTCTCTGCTTTTAAGGACAGGTCAGCAAAACACCTGGTCTGCATACCACTGTCCCACTGCTACCTCTTCTACTGGTGTTTTCAGTCCCAGAACACCATTTCTATATGCCCTTCTCTACAGAGGCAGCAGTACTCTCAGTTTTATGGTACCATACCATCAGTGCTCCCCAAATCATCACACAGTCTGCAGTCTACAAACTTTCGGGACCAGAGTAGGGAAGCTTTCTCCATCATGGGGCACTATCAACATGTGAGCAGTGTTGAGGCTGGTATGCTACAATCAGTGAAGTATGTAGTAAATGACTGTGACAAACAGTATAATTTGTGTCACTCAATTTCCCTCCATGTTTGTCAACTCCTCCTTGATAAACCAATTAAAATGTTCCACTTATTTCATTCTTTCTAAATTCTGCATGGCACCCTTTTCAATACATTGCAACAGATGCACCTTGCCTGCATTCAGCAAGATAACATTCCTCACTGACTTTTAGAACATAATCTGTTCAGCCTATCCTACATTTTTAATGTTCTTTCCTATTACTTTATGCTATTCCCAAAGGCTGCAGTCCACATGGGGCCTCACTGGCACACATTGTGCCACAGCAATTACCAGGTAATGAAACTCACATGCAGTGTTAAGGACTAACTGACAAAAGAAGCGGTAATGCCACTGCAAGTAAAAACAGACCATACACTCACCCAGACATGCTATTTTCACAGTTATATGTTCCCCTTTCTCTCTGGAGCTCCTTGAAACAGATCTTTCCTTGCTTAACCAGCAACACTCAGTCAACAGTTGGCTCATTTCTGCTCATCTTTATTAGAGCAGGAAACACATCTCTTATGTTTCAAAGACAACATGCAGTGGTGGCGATCAGTAACATGGAATATAACAATAGTTTATCTGGAAAAGTATTTAATATGGACAATAAACAAATGCCGTAGAGCAGTGCAGCACTGGCCAAGGTCCAGGGATGACCATGGGTTCCCATCTTGTCCCCTTACAG
Seq C2 exon
CTTTGAGCAGCTCTGCATTAACATTGCAAATGAACACCTTCAGCAGTTCTTTGTGCACCATGTCTTCAAGCTGGAGCAAGAGGAATACCTTGCAGAGCACATTACCTGGAATAACATTGACTTCACTGACAACCGCCAGACCCTGGAAGTCATTGCACTCAAGCCCATGAACATCATCTCCCTCATTGATGAGGAGAGCAAGTTCCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001936:ENSGALT00000002994:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.0=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(10.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACGGATTTTCCTGTGGAT
R:
TGGGAACTTGCTCTCCTCATCA
Band lengths:
343-1817
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]