DreINT0014984 @ danRer10
Intron Retention
Gene
ENSDARG00000044441 | MYO7B (1 of 2)
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr6:28076545-28076988:+
Coord C1 exon
chr6:28076545-28076687
Coord A exon
chr6:28076688-28076777
Coord C2 exon
chr6:28076778-28076988
Length
90 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
3' ss Seq
TCTGTCTGTGATTTCCACAGCTT
3' ss Score
9.95
Exon sequences
Seq C1 exon
GCCATCTACGGAAGGCTGTTTGTGTGGATTGTGACCAAAATCAACAGTGCCATTTACAAACCGCCTTCTGATGACCCCAAACATGTCAGACATTCCATCGGCCTGTTGGACATTTTTGGCTTTGAAAATTTTAAAAACAACAG
Seq A exon
GTTTGTGAAGTAAATGTATGTACATAGATGGTGTGAGAACATGATTTTGACTTTAAGGCGAACTGCTGTTTCTGTCTGTGATTTCCACAG
Seq C2 exon
CTTTGAACAGCTCTGCATCAACTTTGCCAATGAGCAGCTTCAGCAGTTCTTTGTGAAACACGTCTTCAAGCTTGAACAACAGGAGTATGCTCGTGAAGACATAGTCTGGAAGAACATCGAATTTAATGACAACCAGAGCACACTCGATGTTTTGGCCATAAAGTCTCTCAACATTCTTTCCCTTATTGATGAAGAGAGTCGCTTTCCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044441:ENSDART00000143218:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.9=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAAGGCTGTTTGTGTGGAT
R:
ACTGCTGAAGCTGCTCATTGG
Band lengths:
182-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]