BtaINT0098337 @ bosTau6
Intron Retention
Gene
ENSBTAG00000039803 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr2:4828090-4829405:-
Coord C1 exon
chr2:4829227-4829405
Coord A exon
chr2:4828272-4829226
Coord C2 exon
chr2:4828090-4828271
Length
955 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
3' ss Seq
GTGTGTCCATGTGACTGTAGAGG
3' ss Score
4.66
Exon sequences
Seq C1 exon
GGAGGCCCGGGGTGGGCAGAGGCTGATGCTGTCCACGCTGCACGAAGAGGAGTATGAGTTCCGGTCCCCCAGCAGTGTGGCCGTCGCCGAGCTGGTGGCCATGTTTCTGGAGGGCTTGAAGGAGAGGTCCGTGTTCGCCATGGCCCTGCAGGACAGGAAGGCCACAGGTACCCAGCCAG
Seq A exon
GTGGGGAGGGGGCTGGTGAGGGGCCACTCATGTGGCTGGTTGGAGGGCGGCTTGCTTGTGCCAGGCCCTGGTGGTCACGAAGCAGGCAGAGGGGAGGGACTCGAGCAGAGAGAGGGAGAGGCCACAAAGCACTCAGGGTCACCCATGGGCAAGGCCCTCCCTCCTGCAAGATAAGGGAGTTCAGGAGGGCTCTCAGCCCCTCCAAAGTGAAGGGCACTGAGGGATGCCCTTCTTCTGGAAGCAGGGGGAGAGCCAGCCAGGTCACCAGCCCGTGCAGTGCACACCATCCCCACAGCCACCGTTATCCAGTGTTGCAGACAAGGATTGGCGGCTCAGAGGAGGAACGCAGCTTGTCCAGGGCCGCTTAGCTTGCGGGTGGGGATGGGAGCGGGGTGAGGCCTGGTGGTCTCGTTGATGGCCACAGCTTCCCTCAGCACAGCTGGAAATCAGGCTTCAGAAAGTAGGGGAGCAGGGGAGGGCTGTGCATAGGGTCTTAATTGCGCTGGAAACATCAGCAGAAGCTTTGTCCCCACGGCCCATCTCATCCTCACAGCCGCCCTAGGAGGGAAGGGTGATATTCTCCATCTTATAGCTGAGGAAACAAGCTCAGACGGGTCACTTAGCTCCTGGGCAGGTGTGGTGACAGCCTGCCAGTCCTCTGTCCCCTTGGTCCATCTGCCTCACGGCTCCCTGGCCACTTCCTGGTCAGGCCTCTGAGCAGGTCTCCCCAGCTTCTGCCTGCCCAGCTGTGCCTGTCCAGGCCCCCCGAGTGCCTGAGCTCAGGGAATCCCACCCCCAGTCACTCTCGGGGTGGCCTTGGGCCCCCTGCTCTGTGTCCCTGTTTCCTCACCTGTCAGAGGGGACCACCCACAGGATGCCAGCAGGGCCTCTGGCCTCCACTGAACCCTGGGGAAACTGTCTTCTCTGTCTCTTGTGTGTGTCCATGTGACTGTAG
Seq C2 exon
AGGATTCCACCCTCCTGCCCTTCAAGAAGGGGGACTTGCTGATCTTGACAAAGAAGCAGGGGCTGCTGGCCTCTGAGAACTGGACCCTGGCCCAGAATGACCGGACCGAGAAGACGGGACTGGTGCCTACCTCCTGCCTCTACACCATCCCGACAGTCACCAAGCCCTCAGCACAGCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039803:ENSBTAT00000061382:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.131 A=NA C2=0.164
Domain overlap (PFAM):
C1:
PF146041=SH3_9=PU(4.0=3.3)
A:
NA
C2:
PF146041=SH3_9=PD(94.0=77.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGCAGAGGCTGATGCT
R:
CTGTGCTGAGGGCTTGGTG
Band lengths:
343-1298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]