DreINT0101044 @ danRer10
Intron Retention
Gene
ENSDARG00000099871 | myo7aa
Description
myosin VIIAa [Source:ZFIN;Acc:ZDB-GENE-020709-1]
Coordinates
chr18:3160625-3163538:+
Coord C1 exon
chr18:3160625-3160794
Coord A exon
chr18:3160795-3163347
Coord C2 exon
chr18:3163348-3163538
Length
2553 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
3' ss Seq
TCTTCTGTCATGTCCCTCAGCTG
3' ss Score
8.67
Exon sequences
Seq C1 exon
AGGCGGGAAACTTCAGGCTCAGAGCTTCACTTTGGCCACCATTAAAGCAGACGAGTTCACCTTCACCTCTAATAATGCAGAGGACATTCGGGACCTGGTGGTCACTTTCCTGGAGGGGCTGCGCAAGAGGTCAAAGTTCGTCGTGGCCTTGCAGGACAATCCCAGTCCAG
Seq A exon
GTCAGAGACACACAAACACATCAGACTCTATTAATAGACTTGAACTCTTTTGCTTTTACTTAAATGGGTCAATTTTAGAAATGCATGTACAGACTATATTTCTGCACGCAATCAAAAGAGAAGAACGGGAAATTACTGTTTTGCATGGAATAAATAAAACAACTCAAATTTCTAGCAGAAAAGAAAACATGAAATACACTTCATGTACAAAATAAAGTCAGAGTTCAAAATTGAAAATAAAATATTAAATTATGTTATCCATAAACAGAAGGAGGCCCATTTTAGCTACCAGGTAACATTTCATATATATATATTTATATATACGGCAAAAGGAAACCTAAAATAATTTTAAAACCCAGGTCAATTTAAGACTAGGGCCCAGGGCATATTTCAGTCTAAATCTAAGAAAGTACAAAAACTAGAGCTACTTTAACAAAATAACTTAAGTTTTAATTCCCCCACAGTTCAAACACATGCACTATAGGGGAATTGAACAAACTAAATTGTCCATAGTGCACTGAAAAAAATTATTCAAAGATGATTTCTTGTATTTACTCAATTTTTTTACGTTAAGTGTTTGTAAACAATTTAATTGTGTTGAATTTAAACAAACAAATTAAGTTGAACATTATTCAATTTAAATTGTTTGCTTAAATTCAACACAAATAAATTGTTTGCAACAGTTCTGCATGCAACACTTTTTTCAGTGTGTATGTGTGTGAATGCAGGAGTGTATGGGTGTTTCCCAGTGTTGGGTTGCAGTTTGAAGGGCATCTGCTGCGTAAAGCATATGCTGGATAAGTTGGTGGTTCATTCTGCTGTGGCGACCCCTGATGAATAAATGGACTATGCCAAAAAGAAATTGAATGAAATTAGTACACCCAGTATGAATATGTTATGGGGGGAAATATAATAAAAGATAAACAGGAAAAATTAAGAGAAATATAAAAAATATATTTTATAGTTTGTAATTTAGTTGTTGTTGGTTCCTTATTTGAATTGACATGCATTATCTTTCCATTCCTAAAGCTGGTTGAGCACCAAACTATTTTAATGAATTTAACTGTTTAATAAAACTGTTTTGTTTAAATGCACCGGTGTTGTTTGCCGGTTTGGTCTCTCACAACAAACGATATCTTGGAGCCAATAGCTAGACTGTACAATAGGTCCTATAAGATCCACAACAGACTTTCTGGATGGACACATCACTGTTTTGCTCTATCACTTTCTAATGCTTTAACATCTCAAAACTACATTATGAACACAGGTATTAAACTGTACTATCAAATTTTAAATAGCGCTACCTTAGCAGCCCCTTGTGCTTTGGTACCAAAACTCAACACAAGGACTGATCGTTCCACGAAATCTGTAACAAATGGATGATTGCCACTACCGGCTTTTGAAGACTGTTTTGGACAGAGATCTTTCTTTCATGTTTTGAGAATCCCACAACATCTCAAAACAATACCAACACTGAGACTTTTTTTAAAATGCCATGCTCGTCATCTGATGGTGAACTATCGCTGTAGCCACTGACAGAGAAGCCTGCTTTTCTCTATTTTATATGATTGGTGATCGTTTGTACTGTGTTGATGGATGAGATGTCTGTCTGTTTTATGCTTTGCAGAGCAGGAACCTGCTGAAAAACAGCATTCATGCTGAGTCAGGCCCGATTATATTTTAATCTTTTCCTGTTTAAAAAACTATAAATATATAAATAAAAATAAGTAAAAATATATTGTGTAAATTCACTTTGAAATTGATACAAAAATAAATTTTCAAAAGGGACACCTTATTTATGCTGTGCATATTATTTTATTTTAATTTATCATCATTATTATTATGGTTATTTATTTACATTTTTTGAGTCTTGTATTGGGTAGGCTAAAATTGTCCGTTGTGTATGAGTGTGTGTGTGTGTGTGTGAATGAGTGTGTGTGCATGGATGTTTCCCACAGATGGGATGTGGCTGGAAGGGCATCCGCTGCGTAAAAACGTGCTGGATAAGTTGGCGGTTCATTATGCTGTGGCGACCCCGGACTAAAATTCAATTTCAATTCAATTCACCTTTATTTGTATAGCAATTTACAATATAGATTGTGTCAAAGCAGCTTCACATAGAAGATTATAGTAAATTGGGACAGTGATGTTCAGTTCAGTGTAGTTTAATAATCACTACTGAGGGTCTAAACCAGGTGTGGGCAAACATGATCCTGGAGGGCCAGTGTCCTGCATAGTTTAGCTCCAACCCCATTCAAACAGACCTCTCCATAGAGTTCAAGTGATCTTGAAGACACTGATTAGTTTGTTCAGGTGTGTTTGACTAGTGTTGGAACAAAACTCTGCAGGGACGCCGGCCCCCGAGGATCAAGTTTGCCCATCCCTGGTCTAAACACTGGAGGGCAAATCCATCGATGCGTAGCTCTACTGATCCCAAACCATGCAAGCCAGTGGTGACAGCGGAGAGGAAAATAAACTTCACAAATTAATAAAGGGACTAAGCCAACTAGAAAATGAATGAATGAGTCTTGTATCTTCTGTCATGTCCCTCAG
Seq C2 exon
CTGCTGATGACTCCACATTCCTGAGTTTCCTAAAGGGGGATCTGATCGTTCTGGACCAGGACACCGGTGAGCAGGTCATGACGTCCGGCTGGGCTCACGGCACCAACGACAGGACAAAACAGAGAGGAGACTTTCCCGCGGACTGCGTTTACGTGCTGCCCACCGTGGTCAGACCACCGCACGATGTCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099871:ENSDART00000166980:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.203
Domain overlap (PFAM):
C1:
PF146041=SH3_9=PU(13.6=13.8)
A:
NA
C2:
PF146041=SH3_9=PD(84.7=78.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]