MmuINT0104568 @ mm9
Intron Retention
Gene
ENSMUSG00000030761 | Myo7a
Description
myosin VIIA [Source:MGI Symbol;Acc:MGI:104510]
Coordinates
chr7:105213244-105214291:-
Coord C1 exon
chr7:105214122-105214291
Coord A exon
chr7:105213435-105214121
Coord C2 exon
chr7:105213244-105213434
Length
687 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TGCTCACCCCTGCTTCTAAGCTG
3' ss Score
3.54
Exon sequences
Seq C1 exon
GGGAACAAAGATGATGGCCCCCAGCTTTACCCTGGCCACCATCAAAGGAGATGAGTACACCTTCACATCCAGCAATGCTGAGGACATCCGTGACCTGGTGGTCACCTTTCTGGAGGGGCTACGGAAGAGGTCTAAGTATGTGGTGGCACTGCAGGACAATCCTAACCCTG
Seq A exon
GTGAGTGGGTGCTCTGGGGTGGTAGGCAGACTGTACAGATATGAGCCTGGCACTCATAGCAGGTGGCTGGTGCCTTATTGTATTGTTTAGACACCGGGTCCCGGGCAGTACTGCCTTTACCTACAGTCCACAGAACACTTCCTCTCCCACCTTCTAAGACTGTAGCTTACCTCTTATCACCAGCTCCAAGTTAAATGGGGTCCTCCATACTTGATAACACAATGGCACCTCTTTGAAGCAATATGGTGCCCAGACTCCATGGGGAGGCACATGGGAAATGGTGATACCACAGTGACCGTGGAAACCCAGAGGCTGTGGGAACGTGGAGGTCAGGCTCTCCGTGCAGCCTGGTCCAGGGAGGAAGCATAAATGAGCAGGGGTCTGAGACCAAGGGCAGAGAGAGAGCCATGCCCAGAGAAAGCCAGTGTGTCCCAAACTGCTATTGCATTGGCCAGGAGAGGGAAGAAGGTCAGGAGTGAGGAGGAAGGAGCTGAGCTTTGACAGGAGGGTGACACGCTTTGATGGCTAAATCTGGGTGTGGGGTTTGCACAAAGAGTATGCAGAGTGGAGGATGGCGTAGGCCCTCAGCGAGGAGCCGTGGCTTACAGGTCACCAGCCCAAATGAGGATGTTCTAATCCACCCTTGTTTCCCATCCCCATGTGAACCTGCTCACCCCTGCTTCTAAG
Seq C2 exon
CTGGTGAGGAGTCAGGCTTCCTCAGCTTCGCCAAGGGAGACCTCATCATCCTTGACCATGATACTGGTGAGCAGGTCATGAACTCAGGCTGGGCCAACGGCATCAACGAGAGGACCAAGCAGCGCGGCGACTTCCCCACTGACTGTGTATACGTCATGCCCACTGTCACCTTGCCACCAAGGGAGATTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030761-Myo7a:NM_008663:35
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=NA C2=0.184
Domain overlap (PFAM):
C1:
PF146041=SH3_9=PU(13.6=13.8)
A:
NA
C2:
PF146041=SH3_9=PD(84.7=78.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGATGGCCCCCAGCTTTAC
R:
CACAATCTCCCTTGGTGGCAA
Band lengths:
352-1039
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: