MmuEX6012409 @ mm9
Exon Skipping
Gene
ENSMUSG00000030761 | Myo7a
Description
myosin VIIA [Source:MGI Symbol;Acc:MGI:104510]
Coordinates
chr7:105212623-105214405:-
Coord C1 exon
chr7:105214122-105214405
Coord A exon
chr7:105213244-105213434
Coord C2 exon
chr7:105212623-105212747
Length
191 bp
Sequences
Splice sites
3' ss Seq
TGCTCACCCCTGCTTCTAAGCTG
3' ss Score
3.54
5' ss Seq
GTGGTATGT
5' ss Score
7.64
Exon sequences
Seq C1 exon
GGAGTGCCGCGTCTTGCTCTCACTGGGCTGCTCTGACTTGGGCTGTGCTACTTGTCAATCGGGCCGGGCAGGGCTGACCCCGGCTGGACCCTGTTCTCCGTGTTGGTCCTGTAGGGGAACAAAGATGATGGCCCCCAGCTTTACCCTGGCCACCATCAAAGGAGATGAGTACACCTTCACATCCAGCAATGCTGAGGACATCCGTGACCTGGTGGTCACCTTTCTGGAGGGGCTACGGAAGAGGTCTAAGTATGTGGTGGCACTGCAGGACAATCCTAACCCTG
Seq A exon
CTGGTGAGGAGTCAGGCTTCCTCAGCTTCGCCAAGGGAGACCTCATCATCCTTGACCATGATACTGGTGAGCAGGTCATGAACTCAGGCTGGGCCAACGGCATCAACGAGAGGACCAAGCAGCGCGGCGACTTCCCCACTGACTGTGTATACGTCATGCCCACTGTCACCTTGCCACCAAGGGAGATTGTG
Seq C2 exon
GCCCTGGTCACTATGACCCCAGACCAGAGGCAGGATGTCGTCCGGCTCCTGCAGCTTCGCACAGCAGAGCCAGAGGTGCGCGCCAAGCCCTACACGCTAGAGGAGTTCTCCTACGACTACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030761-'46-48,'46-46,47-48=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.184 C2=0.048
Domain overlap (PFAM):
C1:
PF146041=SH3_9=PU(13.6=13.8)
A:
PF146041=SH3_9=PD(84.7=78.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCACCATCAAAGGAGATG
R:
CTCCTCTAGCGTGTAGGGCTT
Band lengths:
243-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: