DreEX6084380 @ danRer10
Exon Skipping
Gene
ENSDARG00000044632 | myo7ab
Description
myosin VIIAb [Source:ZFIN;Acc:ZDB-GENE-091110-4]
Coordinates
chr21:22259754-22260604:+
Coord C1 exon
chr21:22259754-22259923
Coord A exon
chr21:22260040-22260230
Coord C2 exon
chr21:22260480-22260604
Length
191 bp
Sequences
Splice sites
3' ss Seq
GTTTTTGTTTGTTTTTTCAGCTG
3' ss Score
10.15
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
AGGTGGAAAACTGCAGGGACAGAGCTTTACCCTGGCCACTATTAAAGGAGATGAGTACACCTTCACATCCAACAACGCTGAAGACATCCGGGATCTGGTTGTGGCTTTTCTAGAGGGCCTGCGTTCCAGGTCAAAGTTTGTGGTGGCAATGATGGACAGCCATTATCCAG
Seq A exon
CTGGGCAAGATGCTTCGTTCCTGAGATTCTCAAAGGGAGATCTGATCTTTCTGGATGAGCACACTGGAGAACAGGTCCTGACTTCAGGCTGGGCTCATGGGGTCAATGACCGAACCAAGAAGAGAGGAGACTTTCCTGCGGACAATGTCTATGTGCTGCCCACCATCACCAGGCCACAGTATGATATTGTG
Seq C2 exon
TCATTGATCATCATGTCTCCAGACCAGCGTAAGGACTCTGTAAATTTGTCCCAGCAGAATCTGCTGGACAGTGGGGAGAAAGTCCAGCCGTACACTTTAGAGGAGTTCTCCTACGATCACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044632-'38-37,'38-36,39-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.062 C2=0.117
Domain overlap (PFAM):
C1:
PF0001823=SH3_1=PU(6.0=5.2)
A:
PF0001823=SH3_1=PD(92.0=71.9)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGACAGAGCTTTACCCTGG
R:
GTGTACGGCTGGACTTTCTCC
Band lengths:
251-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]