RnoEX6003846 @ rn6
Exon Skipping
Gene
ENSRNOG00000013641 | Myo7a
Description
myosin VIIA [Source:RGD Symbol;Acc:628830]
Coordinates
chr1:163013693-163015350:-
Coord C1 exon
chr1:163015181-163015350
Coord A exon
chr1:163014329-163014519
Coord C2 exon
chr1:163013693-163013817
Length
191 bp
Sequences
Splice sites
3' ss Seq
TGCTCGCCCCTGCTTCAAAGCTG
3' ss Score
5.16
5' ss Seq
GTGGTATGT
5' ss Score
7.64
Exon sequences
Seq C1 exon
GGGAGCAAAACTGATGGCCCCCAGCTTTACACTGGCCACCATCAAAGGGGATGAGTACACCTTCACATCTAGCAATGCTGAGGACATCCGTGACCTGGTGGTCACCTTTCTGGAGGGGCTCCGGAAGAGGTCTAAGTATGTGGTGGCACTGCAGGACAATCCCAACCCTG
Seq A exon
CTGGTGAGGAGTCGGGCTTCCTCAGCTTTGCCAAGGGAGACCTCATCATTCTCGACCATGATACCGGCGAGCAGGTCATGAATTCAGGCTGGGCCAATGGCATCAACGAGAGAACCAAGCAGCGTGGAGACTTCCCCACCGACTGTGTCTACGTCATGCCCACTGTCACCTTGCCACCCAGGGAAATTGTG
Seq C2 exon
GCCCTGGTCACTATGACCCCAGACCAGAGGCAGGATGTTGTCCGGCTTCTGCAGCTGCGCACAGCAGAGCCAGAGGTGCGCACCAAGCCCTACACGCTGGAGGAGTTCTCCTATGACTACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013641-'44-44,'44-43,45-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=0.172 C2=0.048
Domain overlap (PFAM):
C1:
PF146041=SH3_9=PU(13.6=13.8)
A:
PF146041=SH3_9=PD(84.7=78.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACCATCAAAGGGGATGAG
R:
AGAACTCCTCCAGCGTGTAGG
Band lengths:
245-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]