DreEX6063703 @ danRer10
Exon Skipping
Gene
ENSDARG00000099871 | myo7aa
Description
myosin VIIAa [Source:ZFIN;Acc:ZDB-GENE-020709-1]
Coordinates
chr18:3160625-3164175:+
Coord C1 exon
chr18:3160625-3160794
Coord A exon
chr18:3163348-3163538
Coord C2 exon
chr18:3164048-3164175
Length
191 bp
Sequences
Splice sites
3' ss Seq
TCTTCTGTCATGTCCCTCAGCTG
3' ss Score
8.67
5' ss Seq
GTGGTACTG
5' ss Score
2.53
Exon sequences
Seq C1 exon
AGGCGGGAAACTTCAGGCTCAGAGCTTCACTTTGGCCACCATTAAAGCAGACGAGTTCACCTTCACCTCTAATAATGCAGAGGACATTCGGGACCTGGTGGTCACTTTCCTGGAGGGGCTGCGCAAGAGGTCAAAGTTCGTCGTGGCCTTGCAGGACAATCCCAGTCCAG
Seq A exon
CTGCTGATGACTCCACATTCCTGAGTTTCCTAAAGGGGGATCTGATCGTTCTGGACCAGGACACCGGTGAGCAGGTCATGACGTCCGGCTGGGCTCACGGCACCAACGACAGGACAAAACAGAGAGGAGACTTTCCCGCGGACTGCGTTTACGTGCTGCCCACCGTGGTCAGACCACCGCACGATGTCGTG
Seq C2 exon
GCTTTTGTCACGATGACCCCAGATCAGCGTCAGGAGTCGCTCCGCATCTCACACGTCCCAGCACTGACTGAGACGGAGGAGAGGGTAAAGCCCTACACGCTGGAGGAGTTCTCCTACGACTACTTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099871-'38-36,'38-35,39-36=AN
Average complexity
A_S
Mappability confidence:
88%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.203 C2=0.221
Domain overlap (PFAM):
C1:
PF146041=SH3_9=PU(13.6=13.8)
A:
PF146041=SH3_9=PD(84.7=78.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAAACTTCAGGCTCAGAGC
R:
CCTCTCCTCCGTCTCAGTCAG
Band lengths:
250-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]