GgaEX6006886 @ galGal3
Exon Skipping
Gene
ENSGALG00000000733 | MYO7A
Description
NA
Coordinates
chr1:198114656-198115810:-
Coord C1 exon
chr1:198115641-198115810
Coord A exon
chr1:198115333-198115523
Coord C2 exon
chr1:198114656-198114780
Length
191 bp
Sequences
Splice sites
3' ss Seq
AATGGTGTTTTTTCCTGTAGTGG
3' ss Score
7.62
5' ss Seq
GTGGTAAGC
5' ss Score
8.15
Exon sequences
Seq C1 exon
GGGGGGAAAGCTGCAAGGGCAGAGTTTCACCTTGGCCACCATTAAAGCAGATGAATACACTTTCACCTCCAACAATGCAGAGGATATCCGGGACCTGGTAGTGACATTCCTTGAGGGACTAAGAAAAAGATCCAAGTATGTGGTCACTCTCCAAGACAACCCAAACCCTG
Seq A exon
TGGGAGAAGAATCTGGGTTCCTCAGCTTCCTCAAAGGAGATCTCATAGTTCTTGACCAAGACACAGGAGAACATGTGATGAATTCAGGGTGGGCGAATGGATTCAATGAACGAACCAAGCAGAAAGGGGATTTCCCAACAGATTCTGTCTATGTTTTGCCTACTGTCACCATGCCTCCCCTGGAGATCGTG
Seq C2 exon
GCACTGGTTACAATGACCCCTGACCAACGACAGGATGTTATCAGAACCTCCCAGATGGCAATTTCAGACAGCGAAGAGAGAGTGAAGCCATACACCTTGGAGGAATTTTCCTATGATTATTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000733-'34-35,'34-34,35-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=0.141 C2=0.190
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGGGCAGAGTTTCACCTT
R:
TGGCTTCACTCTCTCTTCGCT
Band lengths:
248-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]