GgaEX6006886 @ galGal4
Exon Skipping
Gene
ENSGALG00000000733 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr1:192366163-192367317:-
Coord C1 exon
chr1:192367148-192367317
Coord A exon
chr1:192366840-192367030
Coord C2 exon
chr1:192366163-192366287
Length
191 bp
Sequences
Splice sites
3' ss Seq
AATGGTGTTTTTTCCTGTAGTGG
3' ss Score
7.62
5' ss Seq
GTGGTAAGC
5' ss Score
8.15
Exon sequences
Seq C1 exon
GGGGGGAAAGCTGCAAGGGCAGAGTTTCACCTTGGCCACCATTAAAGCAGATGAATACACTTTCACCTCCAACAATGCAGAGGATATCCGGGACCTGGTAGTGACATTCCTTGAGGGACTAAGAAAAAGATCCAAGTATGTGGTCACTCTCCAAGACAACCCAAACCCTG
Seq A exon
TGGGAGAAGAATCTGGGTTCCTCAGCTTCCTCAAAGGAGATCTCATAGTTCTTGACCAAGACACAGGAGAACATGTGATGAATTCAGGGTGGGCGAATGGATTCAATGAACGAACCAAGCAGAAAGGGGATTTCCCAACAGATTCTGTCTATGTTTTGCCTACTGTCACCATGCCTCCCCTGGAGATCGTG
Seq C2 exon
GCACTGGTTACAATGACCCCTGACCAACGACAGGATGTTATCAGAACCTCCCAGATGGCAATTTCAGACAGCGAAGAGAGAGTGAAGCCATACACCTTGGAGGAATTTTCCTATGATTATTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000733-'47-48,'47-47,49-48=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=0.141 C2=0.190
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGGGCAGAGTTTCACCTT
R:
TGGCTTCACTCTCTCTTCGCT
Band lengths:
248-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]